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arabidopsis ath1 22 k microarray chip  (Thermo Fisher)


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    Thermo Fisher arabidopsis ath1 22 k microarray chip
    Arabidopsis Ath1 22 K Microarray Chip, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarray+chips/pmc04164220-20-6-1
    Average 90 stars, based on 1 article reviews
    arabidopsis ath1 22 k microarray chip - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: SoyXpress: A database for exploring the soybean transcriptome
    Article Snippet: .. Microarray chip information (from Affymetrix), raw data and results are stored in SoyXpress, and each probe is linked to the sequence information and meta-data. ..

    Article Title: Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration
    Article Snippet: .. Notably, the sequenced genome of Xenopus tropicalis facilitated the creation of a genome-wide Affymetrix microarray chip based on more than 1.2 million ESTs and gene models from the X. tropicalis genome [ , ]. ..

    Article Title: Manipulating Large-Scale Arabidopsis Microarray Expression Data: Identifying Dominant Expression Patterns and Biological Process Enrichment
    Article Snippet: .. The Affymetrix™ Arabidopsis ATH1 22 K microarray chip contains pieces of DNA, known as probes, corresponding to approximately 22,000 genes, and has become the quasi-standard in Arabidopsis expression profiling ( 1 ). ..

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. In this study, we employed an Affymetrix microarray chip to compare the gene expression profiles of lung tissue samples from Dapulian (DPL) pigs (a Chinese indigenous pig breed) and Duroc×Landrace×Yorkshire (DLY) pigs after infection with PRRSV. ..

    Article Title: Nuclear envelope transmembrane proteins (NETs) that are up-regulated during myogenesis
    Article Snippet: We used Affymetrix DNA microarray analysis to compare the transcript levels of the novel putative/confirmed NETs in proliferating C2C12 cells vs. differentiated populations examined 6 days after shift to low serum medium (Fig. ). .. Of the 67 NETs described in our proteomics analysis, 60 could be analyzed with the Affymetrix Mouse Genome 430 v2.0 microarray chip used. provides an updated description of the original 67 NETs identified in our proteomics analysis, including homology regions identified by BLAST searches of the most recent Pfam, Smart and NCBI COG databases. .. It also lists the different probe-sets on the Affymetrix 430 v2.0 chip that recognized each of the 60 NET genes detected, and the primers used for analysis of certain transcripts by RT-PCR (described below).

    Article Title: Emergent Genome-Wide Control in Wildtype and Genetically Mutated Lipopolysaccarides-Stimulated Macrophages
    Article Snippet: The microarray dataset obtained from these experiments contains expression levels for 22690 Affymetrix probe set IDs. .. We reprocessed our Affymetrix microarray chip data using Robust Multichip Average (RMA) for further background adjustment and to reduce false positives of our Affymetrix microarray chip – . ..

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. Using Affymetrix microarray chip technology, we compared the gene expression profiles of lung tissues in DPL and DLY pigs after infection with PRRSV and identified sixteen DE genes. ..

    Article Title: Transcriptome Comparison between Fetal and Adult Mouse Livers: Implications for Circadian Clock Mechanisms
    Article Snippet: .. The GSE11923 Gene Expression Omnibus dataset was used as the reference transcriptome for adult liver ( www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE11923 ), which had been generated from the Affymetrix Mouse genome 430 2.0 microarray chip, sharing 22626 probe sets (including several unmapped ones) in common with the Affymetrix Mouse genome 430A 2.0 chip we used in this study. ..

    Sequencing:

    Article Title: SoyXpress: A database for exploring the soybean transcriptome
    Article Snippet: .. Microarray chip information (from Affymetrix), raw data and results are stored in SoyXpress, and each probe is linked to the sequence information and meta-data. ..

    Genome Wide:

    Article Title: Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration
    Article Snippet: .. Notably, the sequenced genome of Xenopus tropicalis facilitated the creation of a genome-wide Affymetrix microarray chip based on more than 1.2 million ESTs and gene models from the X. tropicalis genome [ , ]. ..

    Expressing:

    Article Title: Manipulating Large-Scale Arabidopsis Microarray Expression Data: Identifying Dominant Expression Patterns and Biological Process Enrichment
    Article Snippet: .. The Affymetrix™ Arabidopsis ATH1 22 K microarray chip contains pieces of DNA, known as probes, corresponding to approximately 22,000 genes, and has become the quasi-standard in Arabidopsis expression profiling ( 1 ). ..

    Gene Expression:

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. In this study, we employed an Affymetrix microarray chip to compare the gene expression profiles of lung tissue samples from Dapulian (DPL) pigs (a Chinese indigenous pig breed) and Duroc×Landrace×Yorkshire (DLY) pigs after infection with PRRSV. ..

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. Using Affymetrix microarray chip technology, we compared the gene expression profiles of lung tissues in DPL and DLY pigs after infection with PRRSV and identified sixteen DE genes. ..

    Article Title: Transcriptome Comparison between Fetal and Adult Mouse Livers: Implications for Circadian Clock Mechanisms
    Article Snippet: .. The GSE11923 Gene Expression Omnibus dataset was used as the reference transcriptome for adult liver ( www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE11923 ), which had been generated from the Affymetrix Mouse genome 430 2.0 microarray chip, sharing 22626 probe sets (including several unmapped ones) in common with the Affymetrix Mouse genome 430A 2.0 chip we used in this study. ..

    Infection:

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. In this study, we employed an Affymetrix microarray chip to compare the gene expression profiles of lung tissue samples from Dapulian (DPL) pigs (a Chinese indigenous pig breed) and Duroc×Landrace×Yorkshire (DLY) pigs after infection with PRRSV. ..

    Article Title: Genome-Wide Gene Expression Profiles in Lung Tissues of Pig Breeds Differing in Resistance to Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: .. Using Affymetrix microarray chip technology, we compared the gene expression profiles of lung tissues in DPL and DLY pigs after infection with PRRSV and identified sixteen DE genes. ..

    Chromatin Immunoprecipitation:

    Article Title: Emergent Genome-Wide Control in Wildtype and Genetically Mutated Lipopolysaccarides-Stimulated Macrophages
    Article Snippet: The microarray dataset obtained from these experiments contains expression levels for 22690 Affymetrix probe set IDs. .. We reprocessed our Affymetrix microarray chip data using Robust Multichip Average (RMA) for further background adjustment and to reduce false positives of our Affymetrix microarray chip – . ..

    Generated:

    Article Title: Transcriptome Comparison between Fetal and Adult Mouse Livers: Implications for Circadian Clock Mechanisms
    Article Snippet: .. The GSE11923 Gene Expression Omnibus dataset was used as the reference transcriptome for adult liver ( www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE11923 ), which had been generated from the Affymetrix Mouse genome 430 2.0 microarray chip, sharing 22626 probe sets (including several unmapped ones) in common with the Affymetrix Mouse genome 430A 2.0 chip we used in this study. ..



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    ath1 microarray chips  (Thermo Fisher)
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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
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    ath1 microarray gene chips  (Thermo Fisher)
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    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative <t>microarray</t> datasets. (Online version in colour.)
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    Image Search Results


    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Mutagenesis

    Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Microarray

    Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Expressing

    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    Article Title: Joint inhibition of mitochondrial complex IV and alternative oxidase by genetic or chemical means represses chloroplast transcription in Arabidopsis

    doi: 10.1098/rstb.2019.0409

    Figure Lengend Snippet: Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Article Snippet: Analysis of the global changes in transcript abundance in rps10 mutant was performed using Affymetrix ATH1 microarray gene chips.

    Techniques: Expressing, Microarray