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ath1 microarray chips  (Thermo Fisher)


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    Thermo Fisher ath1 microarray chips
    Ath1 Microarray Chips, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarray+chips/pm39409177-323-12-12
    Average 90 stars, based on 1 article reviews
    ath1 microarray chips - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Transformation Assay:

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle
    Article Snippet: .. The data from each Affymetrix Arabidopsis ATH1 chip were normalized by log (signal + 1) transformation. ..

    other:

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle
    Article Snippet: Pair-wise Pearson correlation coefficients were computed for 58 genes of the starch metabolism pathway across all probes on the Arabidopsis Affymetrix ATH1 chips by using our custom software, MetaOmGraph [ ].

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle
    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Microarray:

    Article Title: Comprehensive Review on Plant Cytochrome P450 Evolution: Copy Number, Diversity, and Motif Analysis From Chlorophyta to Dicotyledoneae
    Article Snippet: .. They utilized public Affymetrix ATH1 microarray expression data to establish correlations between CYP gene expression and various factors such as Arabidopsis organs and tissues, stress responses, hormone responses, and mutants ( ). ..

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Expressing:

    Article Title: Comprehensive Review on Plant Cytochrome P450 Evolution: Copy Number, Diversity, and Motif Analysis From Chlorophyta to Dicotyledoneae
    Article Snippet: .. They utilized public Affymetrix ATH1 microarray expression data to establish correlations between CYP gene expression and various factors such as Arabidopsis organs and tissues, stress responses, hormone responses, and mutants ( ). ..

    Article Title: Arabidopsis ubiquitin ligase PUB41 positively regulates ABA-mediated seed dormancy and drought response.
    Article Snippet: .. Only limited expression data for AtPUB41 is available as the AT5G62560 locus was not included in the Affymetrix ATH1 microarrays. ..

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Gene Expression:

    Article Title: Comprehensive Review on Plant Cytochrome P450 Evolution: Copy Number, Diversity, and Motif Analysis From Chlorophyta to Dicotyledoneae
    Article Snippet: .. They utilized public Affymetrix ATH1 microarray expression data to establish correlations between CYP gene expression and various factors such as Arabidopsis organs and tissues, stress responses, hormone responses, and mutants ( ). ..

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.
    Article Snippet: .. Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG [58]; the average expression level for each chip is 6.6. ..

    Generated:

    Article Title: Regulation of meristem and hormone function revealed through analysis of directly-regulated SHOOT MERISTEMLESS target genes
    Article Snippet: .. Moreover, identification of transcriptionally responsive genes was done using a rather limited dataset generated using Affymetrix ATH1 microarrays, which does not contain probe-sets for all transcripts from the Arabidopsis genome. ..



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    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
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    ath1 microarray gene chips  (Thermo Fisher)
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    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative <t>microarray</t> datasets. (Online version in colour.)
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    Image Search Results


    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Mutagenesis

    Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Microarray

    Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Expressing

    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    Article Title: Joint inhibition of mitochondrial complex IV and alternative oxidase by genetic or chemical means represses chloroplast transcription in Arabidopsis

    doi: 10.1098/rstb.2019.0409

    Figure Lengend Snippet: Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Article Snippet: Analysis of the global changes in transcript abundance in rps10 mutant was performed using Affymetrix ATH1 microarray gene chips.

    Techniques: Expressing, Microarray