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ath1 microarray chip  (Thermo Fisher)


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    Thermo Fisher ath1 microarray chip
    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on <t>ATH1.</t> (C) GO categorization of all genes on the ATH1 chip.
    Ath1 Microarray Chip, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarray+chips/pmc03305669-477-16-22
    Average 86 stars, based on 1 article reviews
    ath1 microarray chip - by Bioz Stars, 2026-10
    86/100 stars

    Images

    1) Product Images from "AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes"

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    Journal: BMC Plant Biology

    doi: 10.1186/1471-2229-12-23

    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.
    Figure Legend Snippet: A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Techniques Used: Mutagenesis

    Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.
    Figure Legend Snippet: Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Techniques Used: Microarray

    Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.
    Figure Legend Snippet: Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Techniques Used: Expressing

    Related Articles

    Transcriptomics:

    Article Title: A strategy for the identification of new abiotic stress determinants in Arabidopsis using web-based data mining and reverse genetics.
    Article Snippet: .. The foremost example is the AtGenExpress project, a systematic transcriptomics study in Arabidopsis conducted using the Affymetrix ATH1 microarray chip. .. ATH1 allows transcript profiling of *24,000 Arabidopsis genes using the Affymetrix one-color microarray gene expression technology (Redman et al., 2004).

    Microarray:

    Article Title: A strategy for the identification of new abiotic stress determinants in Arabidopsis using web-based data mining and reverse genetics.
    Article Snippet: .. The foremost example is the AtGenExpress project, a systematic transcriptomics study in Arabidopsis conducted using the Affymetrix ATH1 microarray chip. .. ATH1 allows transcript profiling of *24,000 Arabidopsis genes using the Affymetrix one-color microarray gene expression technology (Redman et al., 2004).

    Article Title: Moderate drought causes dramatic floral transcriptomic reprogramming to ensure successful reproductive development in Arabidopsis
    Article Snippet: .. For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website. ..

    Article Title: AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV
    Article Snippet: .. Due to their high sequence similarities, they are represented by only one oligonucleotide (array identifier 262054_s_at) on the Affymetrix ATH1 microarray chip. ..

    Article Title: Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development
    Article Snippet: .. Genome-wide transcription studies were performed using an ATH1 microarray chip (Affymetrix) with three independent replicates per genotype, with each replicate representing RNA from a pool of four different MS plates containing 10-d-old seedlings. ..

    Article Title: Organ and Cell Type–Specific Complementary Expression Patterns and Regulatory Neofunctionalization between Duplicated Genes in Arabidopsis thaliana
    Article Snippet: .. We excluded WG duplicates and tandem duplicates that are not included on the Affymetrix ATH1 microarray chip, which contains 22,746 probe sets (>80% of known Arabidopsis genes). ..

    Article Title: Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining
    Article Snippet: .. These transcriptomic experiments were conducted using the Affymetrix ATH1 microarray chip technology containing gene expression data for 22,810 predicted genes and downloaded from the NIH GEO database [ ]. ..

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes
    Article Snippet: .. For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ]. ..

    Article Title: Delineation of condition specific Cis - and Trans -acting elements in plant promoters under various Endo- and exogenous stimuli
    Article Snippet: .. The platform for all samples was Affymetrix ATH1 microarray chip (GPL198). ..

    Sequencing:

    Article Title: AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV
    Article Snippet: .. Due to their high sequence similarities, they are represented by only one oligonucleotide (array identifier 262054_s_at) on the Affymetrix ATH1 microarray chip. ..

    Genome Wide:

    Article Title: Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development
    Article Snippet: .. Genome-wide transcription studies were performed using an ATH1 microarray chip (Affymetrix) with three independent replicates per genotype, with each replicate representing RNA from a pool of four different MS plates containing 10-d-old seedlings. ..

    Gene Expression:

    Article Title: Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining
    Article Snippet: .. These transcriptomic experiments were conducted using the Affymetrix ATH1 microarray chip technology containing gene expression data for 22,810 predicted genes and downloaded from the NIH GEO database [ ]. ..



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    Image Search Results


    A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: A pie graph of GO categorization of genes differentially expressed in the ams mutant . (A-B) GO categorization of genes up- and down-regulated in ams , with enriched categories circled compared with all genes on ATH1. (C) GO categorization of all genes on the ATH1 chip.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Mutagenesis

    Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Venn diagrams of microarray results and previous related study . (A) A comparison of anther preferential genes identified in our study with previously known pollen genes and stamen genes. (B-D) Comparisons between genes differentially expressed in the ams anther and those preferentially expressed in certain organ: anther preferential, stamen and pollen respectively.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Microarray

    Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Journal: BMC Plant Biology

    Article Title: AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

    doi: 10.1186/1471-2229-12-23

    Figure Lengend Snippet: Gene regulatory network of anther development during early stages . Gene regulation is represented by T-bars (negatively) and arrows (positively). The direct regulation confirmed by experiment is represented in bold line. Genes encoding proteins with interaction is represented by double arrows. Gene expression patterns in different tissues are shown by colors (blue for anther specific; red for anther-preferential; green for reproductive-preferential and yellow for genes not included in ATH1 chip). Gene function in tapetum formation is marked by an apostrophe; in pollen wall formation by an asterisk; in callose dissolution by double asterisks; in stamen and petal formation by the letter b; in stamen and carpel formation by the letter c.

    Article Snippet: For the identification of the functions of the differentially expressed genes, the annotations of genes on ATH1 microarray chip were downloaded from Affymetrix website and we used the GO categorization function on TAIR website [ ].

    Techniques: Expressing

    Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Journal: Philosophical Transactions of the Royal Society B: Biological Sciences

    Article Title: Joint inhibition of mitochondrial complex IV and alternative oxidase by genetic or chemical means represses chloroplast transcription in Arabidopsis

    doi: 10.1098/rstb.2019.0409

    Figure Lengend Snippet: Expression level of nuclear genes encoding components of the chloroplast transcription machinery in selected mitochondrial mutants and plants growing under hypoxic conditions. (a) Colour scale represents up (red) or down (blue) fold change values relative to the wild-type. Publicly available dataset GSE 14420 [45] representing three-week-old wild-type plant exposed to 4 h of hypoxia was analysed. (b) Common differentially expressed nuclear genes encoding chloroplast transcription machinery components (ppde. p > 0.95, FC (fold change) 1.5) in representative microarray datasets. (Online version in colour.)

    Article Snippet: Analysis of the global changes in transcript abundance in rps10 mutant was performed using Affymetrix ATH1 microarray gene chips.

    Techniques: Expressing, Microarray