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60-mer oligonucleotide microarray experiment  (Agilent technologies)


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    Agilent technologies 60-mer oligonucleotide microarray experiment
    60 Mer Oligonucleotide Microarray Experiment, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/oligonucleotide+microarray+experiments/pmc03428664-190-21-20
    Average 90 stars, based on 1 article reviews
    60-mer oligonucleotide microarray experiment - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Labeling:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Microarray:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Amplification:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Expressing:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Hybridization:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Genome Wide:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.

    Mutagenesis:

    Article Title: Complex rearrangements between chromosomes 6, 10, and 11 with multiple deletions at breakpoints.
    Article Snippet: Complex Rearrangements Between Chromosomes 6, 10, and 11 With Multiple Deletions at Breakpoints Ni-Chung Lee, Ming Chen, Gwo-Chin Ma, Dong-Jay Lee, Tzu-Jou Wang, Yu-Yuan Ke, Yin-Hsiu Chien, and Wuh-Liang Hwu* Department of Medical Genetics and Pediatrics, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan Department of Genomic Medicine, Changhua Christian Hospital, Changhua, Taiwan Department of Medical Research, Changhua Christian Hospital, Changhua, Taiwan Department of Life Sciences, National Chung-Hsing University, Taichung, Taiwan Department of Obstetrics and Gynecology, National Taiwan University Hospital, Taipei, Taiwan Departments of Pediatrics, Chan-Gung Memorial Hospital, Kaohsiung, Taiwan Department of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan

    Article Title: Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness
    Article Snippet: Expression microarray analysis was performed using a custom-made Agilent 60-mer oligonucleotide microarray.

    Article Title: Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Article Snippet: RNA and labeled cDNA were prepared and hybridized to the Agilent 60-mer custom oligonucleotide microarray as previously described ( 16 ), except that only a single array comparing the wild type to the triple-FDH mutant was analyzed.

    Article Title: Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    Article Snippet: Data for the four biological replicates of each of B. napus 1 and B. napus 2 was obtained from the Agilent 60-mer oligonucleotide microarray experiment already published by Trick et al. [ ] and available from the GEO repository, accession number GSE15915.

    Article Title: Microarray analysis of humic acid effects on Brassica napus growth: Involvement of N, C and S metabolisms
    Article Snippet: Background & aims Winter rapeseed (Brassica napus) is characterized by a low N recovery in seeds and requires high rates of fertilization to maintain yield.. Its nutrient use efficiency could be improved by addition of a biostimulant such as humic acids whose physiological effects have been described previously in some plant species.. However, to our knowledge, no study has focused on transcriptomic analyses to determine metabolic targets of this extract.

    Article Title: Toll-like Receptor 10 in Helicobacter pylori Infection
    Article Snippet: Complementary RNA was amplified, labeled, and hybridized to a 44 K Agilent 60-mer oligonucleotide microarray according to the manufacturer's instructions.

    Article Title: The Influence of cis-Regulatory Elements on DNA Methylation Fidelity
    Article Snippet: The labeled DNA samples were then combined and hybridized to a customized 60-mer oligonucleotide microarray (Agilent, Santa Clara, CA) containing over 40,000 CpG-rich fragments from 12,000 known gene promoters.



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    Image Search Results


    A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

    Journal: Journal of Alzheimer's Disease Reports

    Article Title: Transcriptomic Analysis of Alzheimer’s Disease Pathways in a Pakistani Population 1

    doi: 10.3233/ADR-230146

    Figure Lengend Snippet: A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

    Article Snippet: The oligonucleotide microarray experiments were conducted by EpigenDx (Boston, MA) using the Affymetrix U133 Plus 2.0 Array platform, which has comprehensive coverage of the whole transcribed human genome on a single array.

    Techniques: Derivative Assay, Microarray, Expressing, Activation Assay

    Comparison of transcript quantification by Affymetrix microarray with real time RT-PCR. A 200 ng aliquot total RNA from dDAVP- and vehicle-exposed mpkCCD cells was used for quantification of transcript abundances with real time RT-PCR. *, statistically significant versus no change i.e. log2(dDAVP/vehicle) = 0 (p < 0.05, n = 3). The RefSeq accession numbers are: Akap12, NM_031185; Aqp2, NM_009699; Asap2, NM_001004364; C3, NM_009778; Clmn, NM_001040682; Cpt1a, NM_013495; Fth1, NM_010239; Gsdmc1, NM_031378; Gsdmc2, NM_177912; Gsdmc4, XM_001474104; Gstt3, NM_133994; Idh1, NM_001111320; Mon2, NM_153395; Osbpl1a, NM_207530; Spnb3, NM_021287; and Trip11, XM_001001171.

    Journal: Molecular & Cellular Proteomics : MCP

    Article Title: Quantitative Protein and mRNA Profiling Shows Selective Post-Transcriptional Control of Protein Expression by Vasopressin in Kidney Cells *

    doi: 10.1074/mcp.M110.004036

    Figure Lengend Snippet: Comparison of transcript quantification by Affymetrix microarray with real time RT-PCR. A 200 ng aliquot total RNA from dDAVP- and vehicle-exposed mpkCCD cells was used for quantification of transcript abundances with real time RT-PCR. *, statistically significant versus no change i.e. log2(dDAVP/vehicle) = 0 (p < 0.05, n = 3). The RefSeq accession numbers are: Akap12, NM_031185; Aqp2, NM_009699; Asap2, NM_001004364; C3, NM_009778; Clmn, NM_001040682; Cpt1a, NM_013495; Fth1, NM_010239; Gsdmc1, NM_031378; Gsdmc2, NM_177912; Gsdmc4, XM_001474104; Gstt3, NM_133994; Idh1, NM_001111320; Mon2, NM_153395; Osbpl1a, NM_207530; Spnb3, NM_021287; and Trip11, XM_001001171.

    Article Snippet: To address whether changes in protein abundance measured by SILAC LC-MS/MS are generally because of corresponding changes in mRNA levels, we carried out oligonucleotide microarray experiments (Affymetrix) in mpkCCD cells treated in the same manner (0.1 n m dDAVP or vehicle for 5 days).

    Techniques: Microarray, Quantitative RT-PCR