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Genomictree Inc dna microarray hybridization
Dna Microarray Hybridization, supplied by Genomictree Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/oligonucleotide+microarray+experiments/microarray+chips/10__1002_slash_ejlt__201400581-183-9-4
Average 90 stars, based on 1 article reviews
dna microarray hybridization - by Bioz Stars, 2026-09
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Microarray:

Article Title: Dysregulated microRNAs in non-cirrhotic hepatocellular carcinoma
Article Snippet: MicroRNAs (miRNAs) are endogenous noncoding 21–23 nucleotide RNAs that are involved in posttranscriptional regulation.. They control various cellular processes, one of which is tumorigenesis. miRNAs have been implicated in the pathogenesis of hepatocellular carcinoma (HCC), the most common primary liver cancer.. To find yet-to-be-identified miRNAs associated with HCC tumorigenesis, we resected HCC and adjacent non-tumor liver tissues from patients and excluded liver tissues harboring fibrosis from further analysis.

Article Title: Exploring a Novel Role of Glycerol Kinase 1 in Prostate Cancer PC-3 Cells
Article Snippet: .. Microarray analysis was conducted using GenomicTree (Daejeon, Republic of Korea). .. And raw data were normalized and clustered by gene fold-changes using GebeSpringGX 7.3.1 (Agilent).

Article Title: Transcriptomics expression analysis to unveil the molecular mechanisms underlying the cocoa polyphenol treatment in diet-induced obesity rats.
Article Snippet: The authors would like to acknowledge the Faculty of Medicine and Health Sciences for the use of medical genetics laboratory facilities. .. Dr. Kim Myung Soon in to unveil themolecularmechanisms underlying the cocoa polyphenol 10.1016/j.ygeno.2014.11.002 (Genomictree, Inc.) is acknowledged for expert DNA microarray hybridization. ..

Article Title: Cocoa polyphenols treatment ameliorates visceral obesity by reduction lipogenesis and promoting fatty acid oxidation genes in obese rats through interfering with AMPK pathway
Article Snippet: The authors would like to acknowledge the Faculty of Medicine and Health Sciences for the use of medical genetics laboratory facilities. .. Dr. KimMyung Soon in (Genomictree, Inc.) is acknowledged for expert DNA microarray hybridization. ..

Article Title: Cooperation of erythrocytes with leukocytes in immune response of a teleost Oplegnathus fasciatus
Article Snippet: The most abundant cell type in the blood of mammals and fish is erythrocyte.. Unlike mammalian erythrocyte, fish erythrocyte is nucleated.. The functional differentiation of teleost erythrocyte is insufficient compared with that of mammals.

Article Title: Hepatic genome-wide expression of lipid metabolism in diet-induced obesity rats treated with cocoa polyphenols
Article Snippet: Cocoa polyphenols (CPs) have been shown to exhibit hypolipidaemic actions, suggesting that CPs offer great potential for ameliorating lipid abnormalities.. However, the conceivable molecular mechanisms underlying the pharmacological activity of CPs in obesity-induced liver steatosis have yet to be an investigated.. This study analysed the hepatic genome-wide expression patterns in high-fat diet (HFD)-induced obese rats using DNA microarray.

Article Title: Recombinant thioredoxin 1 protein: the immune-adjuvant effect of Streptococcus iniae and its safety in rock bream, Oplegnathus fasciatus.
Article Snippet: Adjuvant is an immune enhancer commonly used during vaccination to enhance the host immune response.. In the present study, we analysed the recombinant protein produced from rock bream thioredoxin 1 cDNA (rRbTRx1).. To verify the immune-stimulatory effect of this recombinant protein, changes in the expression level of several genes were investigated using the cDNA microarray chips in rock bream peripheral blood leukocytes stimulated with rRbTRx1.

Article Title: Microarray analysis of gene expression in peripheral blood leucocytes from rock bream (Oplegnathus fasciatus) after stimulation by LPS, ConA/PMA, and poly I:C
Article Snippet: The responses of peripheral blood leucocytes (PBLs) from the rock bream Oplegnathus fasciatus stimulated with lipopolysaccharides (LPS), concanavalin A/phorbol myristate acetate (Con A/PMA), and/or polyriboinosinic polyribocytidylic acid (poly I:C) were investigated using a cDNA microarray consisting of 2,400 clones.. A total of 336 unique genes were more than twofold upregulated: 169 in LPS-stimulated PBLs, 209 in Con A/PMA-stimulated PBLs, and 146 in poly I:C-stimulated PBLs.. Moreover, other genes were similarly up-regulated with combinations of stimulants: 85 genes in PBLs stimulated with both LPS and Con A/PMA, 79 in PBLs stimulated with both LPS and poly I:C, and 66 in PBLs stimulated with both Con A/PMA and poly I:C. Furthermore, 42 other genes were more than twofold up-regulated in PBLs stimulated with all tested mitogens.

Hybridization:

Article Title: Transcriptomics expression analysis to unveil the molecular mechanisms underlying the cocoa polyphenol treatment in diet-induced obesity rats.
Article Snippet: The authors would like to acknowledge the Faculty of Medicine and Health Sciences for the use of medical genetics laboratory facilities. .. Dr. Kim Myung Soon in to unveil themolecularmechanisms underlying the cocoa polyphenol 10.1016/j.ygeno.2014.11.002 (Genomictree, Inc.) is acknowledged for expert DNA microarray hybridization. ..

Article Title: Cocoa polyphenols treatment ameliorates visceral obesity by reduction lipogenesis and promoting fatty acid oxidation genes in obese rats through interfering with AMPK pathway
Article Snippet: The authors would like to acknowledge the Faculty of Medicine and Health Sciences for the use of medical genetics laboratory facilities. .. Dr. KimMyung Soon in (Genomictree, Inc.) is acknowledged for expert DNA microarray hybridization. ..

Article Title: Hepatic genome-wide expression of lipid metabolism in diet-induced obesity rats treated with cocoa polyphenols
Article Snippet: Cocoa polyphenols (CPs) have been shown to exhibit hypolipidaemic actions, suggesting that CPs offer great potential for ameliorating lipid abnormalities.. However, the conceivable molecular mechanisms underlying the pharmacological activity of CPs in obesity-induced liver steatosis have yet to be an investigated.. This study analysed the hepatic genome-wide expression patterns in high-fat diet (HFD)-induced obese rats using DNA microarray.

Produced:

Article Title: Cooperation of erythrocytes with leukocytes in immune response of a teleost Oplegnathus fasciatus
Article Snippet: The most abundant cell type in the blood of mammals and fish is erythrocyte.. Unlike mammalian erythrocyte, fish erythrocyte is nucleated.. The functional differentiation of teleost erythrocyte is insufficient compared with that of mammals.



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A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from <t>microarray</t> analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .
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Comparison of transcript quantification by Affymetrix <t>microarray</t> with real time RT-PCR. A 200 ng aliquot total RNA from dDAVP- and vehicle-exposed mpkCCD cells was used for quantification of transcript abundances with real time RT-PCR. *, statistically significant versus no change i.e. log2(dDAVP/vehicle) = 0 (p < 0.05, n = 3). The RefSeq accession numbers are: Akap12, NM_031185; Aqp2, NM_009699; Asap2, NM_001004364; C3, NM_009778; Clmn, NM_001040682; Cpt1a, NM_013495; Fth1, NM_010239; Gsdmc1, NM_031378; Gsdmc2, NM_177912; Gsdmc4, XM_001474104; Gstt3, NM_133994; Idh1, NM_001111320; Mon2, NM_153395; Osbpl1a, NM_207530; Spnb3, NM_021287; and Trip11, XM_001001171.
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A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

Journal: Journal of Alzheimer's Disease Reports

Article Title: Transcriptomic Analysis of Alzheimer’s Disease Pathways in a Pakistani Population 1

doi: 10.3233/ADR-230146

Figure Lengend Snippet: A) The stacked bar chart represents a summary of total upregulated (red) and downregulated (green) genes representing 22 important signaling and disease pathways in AD subjects compared to controls. The output core analysis, reflecting the differential gene expressions obtained from the microarrays (gene sets with≥2-fold change, t -test, p < 0.05). B) Ingenuity Pathway Analysis (IPA)-derived Amyloid Processing network of differentially expressed genes derived from microarray analysis. IPA analysis identified a group of genes expression status and their potential interactive links in the context of Amyloid Processing, Neuronal Death. We noted activation of Gamma Secretase, Beta Secretase, upregulation of ERK1/2 CK1/2 P38MAPK, PKA, PRKCE, CDK5 , and CDK5R1 and downregulation of MAPT , and GSK3B .

Article Snippet: The oligonucleotide microarray experiments were conducted by EpigenDx (Boston, MA) using the Affymetrix U133 Plus 2.0 Array platform, which has comprehensive coverage of the whole transcribed human genome on a single array.

Techniques: Derivative Assay, Microarray, Expressing, Activation Assay

Comparison of transcript quantification by Affymetrix microarray with real time RT-PCR. A 200 ng aliquot total RNA from dDAVP- and vehicle-exposed mpkCCD cells was used for quantification of transcript abundances with real time RT-PCR. *, statistically significant versus no change i.e. log2(dDAVP/vehicle) = 0 (p < 0.05, n = 3). The RefSeq accession numbers are: Akap12, NM_031185; Aqp2, NM_009699; Asap2, NM_001004364; C3, NM_009778; Clmn, NM_001040682; Cpt1a, NM_013495; Fth1, NM_010239; Gsdmc1, NM_031378; Gsdmc2, NM_177912; Gsdmc4, XM_001474104; Gstt3, NM_133994; Idh1, NM_001111320; Mon2, NM_153395; Osbpl1a, NM_207530; Spnb3, NM_021287; and Trip11, XM_001001171.

Journal: Molecular & Cellular Proteomics : MCP

Article Title: Quantitative Protein and mRNA Profiling Shows Selective Post-Transcriptional Control of Protein Expression by Vasopressin in Kidney Cells *

doi: 10.1074/mcp.M110.004036

Figure Lengend Snippet: Comparison of transcript quantification by Affymetrix microarray with real time RT-PCR. A 200 ng aliquot total RNA from dDAVP- and vehicle-exposed mpkCCD cells was used for quantification of transcript abundances with real time RT-PCR. *, statistically significant versus no change i.e. log2(dDAVP/vehicle) = 0 (p < 0.05, n = 3). The RefSeq accession numbers are: Akap12, NM_031185; Aqp2, NM_009699; Asap2, NM_001004364; C3, NM_009778; Clmn, NM_001040682; Cpt1a, NM_013495; Fth1, NM_010239; Gsdmc1, NM_031378; Gsdmc2, NM_177912; Gsdmc4, XM_001474104; Gstt3, NM_133994; Idh1, NM_001111320; Mon2, NM_153395; Osbpl1a, NM_207530; Spnb3, NM_021287; and Trip11, XM_001001171.

Article Snippet: To address whether changes in protein abundance measured by SILAC LC-MS/MS are generally because of corresponding changes in mRNA levels, we carried out oligonucleotide microarray experiments (Affymetrix) in mpkCCD cells treated in the same manner (0.1 n m dDAVP or vehicle for 5 days).

Techniques: Microarray, Quantitative RT-PCR