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prism barcoding method  (Broad Institute Inc)

 
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    Broad Institute Inc prism barcoding method
    Details of new and updated datasets in PharmacoDB 2.0
    Prism Barcoding Method, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/barcoding+methods/prism+barcoding+method/pmc08728279-1-29-34
    Average 90 stars, based on 1 article reviews
    prism barcoding method - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis"

    Article Title: PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis

    Journal: Nucleic Acids Research

    doi: 10.1093/nar/gkab1084

    Details of new and updated datasets in PharmacoDB 2.0
    Figure Legend Snippet: Details of new and updated datasets in PharmacoDB 2.0

    Techniques Used: Microarray, Colorimetric Assay, Mutagenesis, Luminex, Generated

    Related Articles

    RNA Sequencing:

    Article Title: PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis
    Article Snippet: US National Cancer Institute 60 anticancer drug screen ( NCI-60 ) , NCI-60 dataset consists of molecular profiles as well as the dose–response data from screening small molecules including approved and investigational drug compounds , RNA-seq isoforms RNA-seq composite Microarray MicroRNA , 162 , 54774 , 15 , Sulforhodamine B colorimetry , https://wiki.nci.nih.gov/download/attachments/147193864/DOSERESP.zip?version=1&modificationDate=1622830743000&api=v2 , https://orcestra.ca/pset/10.5281/zenodo.5570629. .. The PRISM Repurposing dataset ( PRISM ) , The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard , *RNA-seq Microarray Mutation CNV , **480 , 1437 , 22 , PRISM (Luminex) , https://ndownloader.figshare.com/files/20237757 , https://orcestra.ca/pset/10.5281/zenodo.5570757. .. Genomics of Drug Sensitivity in Cancer ( GDSC1 ) , Genomics of Drug Sensitivity in Cancer (GDSC) Project is part of a collaboration between Wellcome Trust Sanger Institute and the Massachusetts General Hospital Cancer Center. Both GDSC1 and 2 datasets contains dose response as well as molecular data from screening anti-cancer therapeutics across genetically characterized human cancer cell lines , RNA-seq Microarray Mutation Mutation (Exome) CNV Fusion , 1104 , 303 , 29 , Resazurin or Syto60 , ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/release-8.2/GDSC1_public_raw_data_25Feb20.csv , https://orcestra.ca/pset/10.5281/zenodo.3905485.

    Microarray:

    Article Title: PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis
    Article Snippet: US National Cancer Institute 60 anticancer drug screen ( NCI-60 ) , NCI-60 dataset consists of molecular profiles as well as the dose–response data from screening small molecules including approved and investigational drug compounds , RNA-seq isoforms RNA-seq composite Microarray MicroRNA , 162 , 54774 , 15 , Sulforhodamine B colorimetry , https://wiki.nci.nih.gov/download/attachments/147193864/DOSERESP.zip?version=1&modificationDate=1622830743000&api=v2 , https://orcestra.ca/pset/10.5281/zenodo.5570629. .. The PRISM Repurposing dataset ( PRISM ) , The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard , *RNA-seq Microarray Mutation CNV , **480 , 1437 , 22 , PRISM (Luminex) , https://ndownloader.figshare.com/files/20237757 , https://orcestra.ca/pset/10.5281/zenodo.5570757. .. Genomics of Drug Sensitivity in Cancer ( GDSC1 ) , Genomics of Drug Sensitivity in Cancer (GDSC) Project is part of a collaboration between Wellcome Trust Sanger Institute and the Massachusetts General Hospital Cancer Center. Both GDSC1 and 2 datasets contains dose response as well as molecular data from screening anti-cancer therapeutics across genetically characterized human cancer cell lines , RNA-seq Microarray Mutation Mutation (Exome) CNV Fusion , 1104 , 303 , 29 , Resazurin or Syto60 , ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/release-8.2/GDSC1_public_raw_data_25Feb20.csv , https://orcestra.ca/pset/10.5281/zenodo.3905485.

    Mutagenesis:

    Article Title: PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis
    Article Snippet: US National Cancer Institute 60 anticancer drug screen ( NCI-60 ) , NCI-60 dataset consists of molecular profiles as well as the dose–response data from screening small molecules including approved and investigational drug compounds , RNA-seq isoforms RNA-seq composite Microarray MicroRNA , 162 , 54774 , 15 , Sulforhodamine B colorimetry , https://wiki.nci.nih.gov/download/attachments/147193864/DOSERESP.zip?version=1&modificationDate=1622830743000&api=v2 , https://orcestra.ca/pset/10.5281/zenodo.5570629. .. The PRISM Repurposing dataset ( PRISM ) , The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard , *RNA-seq Microarray Mutation CNV , **480 , 1437 , 22 , PRISM (Luminex) , https://ndownloader.figshare.com/files/20237757 , https://orcestra.ca/pset/10.5281/zenodo.5570757. .. Genomics of Drug Sensitivity in Cancer ( GDSC1 ) , Genomics of Drug Sensitivity in Cancer (GDSC) Project is part of a collaboration between Wellcome Trust Sanger Institute and the Massachusetts General Hospital Cancer Center. Both GDSC1 and 2 datasets contains dose response as well as molecular data from screening anti-cancer therapeutics across genetically characterized human cancer cell lines , RNA-seq Microarray Mutation Mutation (Exome) CNV Fusion , 1104 , 303 , 29 , Resazurin or Syto60 , ftp://ftp.sanger.ac.uk/pub/project/cancerrxgene/releases/release-8.2/GDSC1_public_raw_data_25Feb20.csv , https://orcestra.ca/pset/10.5281/zenodo.3905485.

    Article Title: Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny
    Article Snippet: .. Dataset Description Collected OmicsData # Cell lines # Drugs Collected Drugs Sensitivity Metrics Data Sources Cancer Therapeutic Response Portal (CTRP1) CTRP project was developed by researchers at the Center for the Science of Therapeutics at the Broad Institute and is sponsored in part by the NCI's Cancer Target Discovery and Development Network. mRNA expression, Gene fusion, Methylation, Mutation, CNV, Protein 9 341 AUC https://portals.broadinstitute.org/ctrp.v1/ Cancer Therapeutic Response Portal (CTRP2) 71 481 AUC https://portals.broadinstitute.org/ctrp.v2.1/ The PRISM Repurposing dataset (PRISM) The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard. ..

    Clinical Proteomics:

    Article Title: Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny
    Article Snippet: .. Dataset Description Collected OmicsData # Cell lines # Drugs Collected Drugs Sensitivity Metrics Data Sources Cancer Therapeutic Response Portal (CTRP1) CTRP project was developed by researchers at the Center for the Science of Therapeutics at the Broad Institute and is sponsored in part by the NCI's Cancer Target Discovery and Development Network. mRNA expression, Gene fusion, Methylation, Mutation, CNV, Protein 9 341 AUC https://portals.broadinstitute.org/ctrp.v1/ Cancer Therapeutic Response Portal (CTRP2) 71 481 AUC https://portals.broadinstitute.org/ctrp.v2.1/ The PRISM Repurposing dataset (PRISM) The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard. ..

    Expressing:

    Article Title: Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny
    Article Snippet: .. Dataset Description Collected OmicsData # Cell lines # Drugs Collected Drugs Sensitivity Metrics Data Sources Cancer Therapeutic Response Portal (CTRP1) CTRP project was developed by researchers at the Center for the Science of Therapeutics at the Broad Institute and is sponsored in part by the NCI's Cancer Target Discovery and Development Network. mRNA expression, Gene fusion, Methylation, Mutation, CNV, Protein 9 341 AUC https://portals.broadinstitute.org/ctrp.v1/ Cancer Therapeutic Response Portal (CTRP2) 71 481 AUC https://portals.broadinstitute.org/ctrp.v2.1/ The PRISM Repurposing dataset (PRISM) The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard. ..

    Methylation:

    Article Title: Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny
    Article Snippet: .. Dataset Description Collected OmicsData # Cell lines # Drugs Collected Drugs Sensitivity Metrics Data Sources Cancer Therapeutic Response Portal (CTRP1) CTRP project was developed by researchers at the Center for the Science of Therapeutics at the Broad Institute and is sponsored in part by the NCI's Cancer Target Discovery and Development Network. mRNA expression, Gene fusion, Methylation, Mutation, CNV, Protein 9 341 AUC https://portals.broadinstitute.org/ctrp.v1/ Cancer Therapeutic Response Portal (CTRP2) 71 481 AUC https://portals.broadinstitute.org/ctrp.v2.1/ The PRISM Repurposing dataset (PRISM) The PRISM dataset consists of dose–response data from assessing the anti-cancer effects of non-oncology drugs on human cancer cell-lines using the PRISM barcoding method developed by Broad Institute of MIT and Harvard. ..



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    Image Search Results


    Journal: bioRxiv

    Article Title: Optimising the use of Oxford nanopore sequencing technology for detection of Wolbachia bacterial endosymbionts in Anopheles mosquitoes

    doi: 10.1101/2025.06.16.659891

    Figure Lengend Snippet:

    Article Snippet: The 16S Barcoding Kit library preparation method was also able to provide consistent microbiome profiles in which Wolbachia was the dominant species which is consistent with previous profiles using 16S rRNA Illumina amplicon sequencing .

    Techniques: Sequencing

    All bar graphs depict sequencing runs using two different barcoding kits: the Rapid PCR Barcoding Kit 24 V14 (runs 2-6) and the 16S Barcoding Kit 24 V14 (runs 7,8,9,11,12). Each run is represented by a vertical column. A ) Total Data generated (GB). B ) Percentage of passed vs failed bases called for each run. C ) Total number of reads obtained in each sequencing run. D ) Percentage of unclassified passed reads and unclassified passed bases for each run.

    Journal: bioRxiv

    Article Title: Optimising the use of Oxford nanopore sequencing technology for detection of Wolbachia bacterial endosymbionts in Anopheles mosquitoes

    doi: 10.1101/2025.06.16.659891

    Figure Lengend Snippet: All bar graphs depict sequencing runs using two different barcoding kits: the Rapid PCR Barcoding Kit 24 V14 (runs 2-6) and the 16S Barcoding Kit 24 V14 (runs 7,8,9,11,12). Each run is represented by a vertical column. A ) Total Data generated (GB). B ) Percentage of passed vs failed bases called for each run. C ) Total number of reads obtained in each sequencing run. D ) Percentage of unclassified passed reads and unclassified passed bases for each run.

    Article Snippet: The 16S Barcoding Kit library preparation method was also able to provide consistent microbiome profiles in which Wolbachia was the dominant species which is consistent with previous profiles using 16S rRNA Illumina amplicon sequencing .

    Techniques: Sequencing, Generated

    Libraries prepared and sequenced using either the Rapid PCR Barcoding Kit 24 V14 (Rapid) or 16S Barcoding Kit 24 V14 (16S).

    Journal: bioRxiv

    Article Title: Optimising the use of Oxford nanopore sequencing technology for detection of Wolbachia bacterial endosymbionts in Anopheles mosquitoes

    doi: 10.1101/2025.06.16.659891

    Figure Lengend Snippet: Libraries prepared and sequenced using either the Rapid PCR Barcoding Kit 24 V14 (Rapid) or 16S Barcoding Kit 24 V14 (16S).

    Article Snippet: The 16S Barcoding Kit library preparation method was also able to provide consistent microbiome profiles in which Wolbachia was the dominant species which is consistent with previous profiles using 16S rRNA Illumina amplicon sequencing .

    Techniques: