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sureprint g3 mouse cgh 244 k microarray kit  (Agilent technologies)


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    Agilent technologies sureprint g3 mouse cgh 244 k microarray kit
    Sureprint G3 Mouse Cgh 244 K Microarray Kit, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/244+k+microarray/pmc11076575-328-20-22
    Average 90 stars, based on 1 article reviews
    sureprint g3 mouse cgh 244 k microarray kit - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: DNA methylation in glioblastoma: impact on gene expression and clinical outcome
    Article Snippet: .. Gene expression profiling was carried out with the Agilent Whole Human Genome 4 × 44 K Microarray Kit (Agilent Technologies). ..

    Article Title: Loss of synaptic ribbons is an early cause in ROS-induced acquired sensorineural hearing loss.
    Article Snippet: Total RNA was extracted from the cochleae of the two experimental pairs (five each WT vs. NOX4-TG mice at P6 and four each WT mice without noise exposure vs. WT mice with noise exposure at P15 [24 h after noise exposure]) using a NucleoSpin RNA kit (MACHEREY-NAGEL GmbH & Co. KG, Düren, Germany; cat# 740955). .. Gene expression profiles were examined using the SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). ..

    Article Title: Dendritic cell vaccine induces antigen-specific CD8 + T cells that are metabolically distinct from those of peptide vaccine and is well-combined with PD-1 checkpoint blockade
    Article Snippet: CD8 + CD90.1 + cells were sorted on a FACS Aria II (BD Biosciences, San Jose, CA) and total RNA isolated using Trizol Reagent (Life technologies, Carlsbad, CA) and RNeasy spin columns (Qiagen, Hilden, Germany) according to the manufacturers' protocols. .. Gene expression was evaluated using SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies). .. Datasets were normalized using the Subio Platform (Subio Inc. Kagoshima, Japan) as follows: (1) Signals were aligned at the 75th percentile. (2) Weak signals <4.0 were replaced with the value 4.0. (3) Fold changes to mean values were converted to log 2 .

    Article Title: Dispensable role of Rac1 and Rac3 after cochlear hair cell specification
    Article Snippet: Total RNA was extracted from the cochleae of five P6 WT mice using a NucleoSpin RNA kit (MACHEREY–NAGEL GmbH & Co. KG, Düren, Germany). .. Gene expression profiles were examined using the SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). .. RT-PCR was performed with 1 μg of total RNA obtained from 14 membranous cochleae and vestibules of 4-week-old WT mice using SuperScript III reverse transcriptase (Invitrogen, Carlsbad, CA, USA), as previously described [ ].

    Microarray:

    Article Title: DNA methylation in glioblastoma: impact on gene expression and clinical outcome
    Article Snippet: .. Gene expression profiling was carried out with the Agilent Whole Human Genome 4 × 44 K Microarray Kit (Agilent Technologies). ..

    Article Title: Identification of Iron Homeostasis Genes Dysregulation Potentially Involved in Retinopathy of Prematurity Pathogenicity by Microarray Analysis
    Article Snippet: .. Microarray hybridization was performed on Agilent SurePrint G3 Human GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). .. The arrays were washed consecutively using Gene Expression Wash Buffer Kit (Agilent Technologies) after hybridization.

    Article Title: Knowledge Graph Construction based on Granulosa Cells Transcriptome from polycystic ovary syndrome with Normoandrogen and Hyperandrogen
    Article Snippet: The subjects’ characteristics are provided.The quality and integrity of RNA samples were analyzed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Inc., Palo Alto, CA, USA)18. .. Microarray Data Analysis Each RNA sample was generated by Agilent SurePrint G3 Human GE 8 × 60 K Microarray kit (Agilent Technologies Canada Inc., Mississauga, ON) with a standardized protocol as described19. ..

    Article Title: Loss of synaptic ribbons is an early cause in ROS-induced acquired sensorineural hearing loss.
    Article Snippet: Total RNA was extracted from the cochleae of the two experimental pairs (five each WT vs. NOX4-TG mice at P6 and four each WT mice without noise exposure vs. WT mice with noise exposure at P15 [24 h after noise exposure]) using a NucleoSpin RNA kit (MACHEREY-NAGEL GmbH & Co. KG, Düren, Germany; cat# 740955). .. Gene expression profiles were examined using the SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). ..

    Article Title: Dendritic cell vaccine induces antigen-specific CD8 + T cells that are metabolically distinct from those of peptide vaccine and is well-combined with PD-1 checkpoint blockade
    Article Snippet: CD8 + CD90.1 + cells were sorted on a FACS Aria II (BD Biosciences, San Jose, CA) and total RNA isolated using Trizol Reagent (Life technologies, Carlsbad, CA) and RNeasy spin columns (Qiagen, Hilden, Germany) according to the manufacturers' protocols. .. Gene expression was evaluated using SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies). .. Datasets were normalized using the Subio Platform (Subio Inc. Kagoshima, Japan) as follows: (1) Signals were aligned at the 75th percentile. (2) Weak signals <4.0 were replaced with the value 4.0. (3) Fold changes to mean values were converted to log 2 .

    Article Title: Dispensable role of Rac1 and Rac3 after cochlear hair cell specification
    Article Snippet: Total RNA was extracted from the cochleae of five P6 WT mice using a NucleoSpin RNA kit (MACHEREY–NAGEL GmbH & Co. KG, Düren, Germany). .. Gene expression profiles were examined using the SurePrint G3 Mouse GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). .. RT-PCR was performed with 1 μg of total RNA obtained from 14 membranous cochleae and vestibules of 4-week-old WT mice using SuperScript III reverse transcriptase (Invitrogen, Carlsbad, CA, USA), as previously described [ ].

    Article Title: Knowledge graph construction based on granulosa cells transcriptome from polycystic ovary syndrome with normoandrogen and hyperandrogen
    Article Snippet: The quality and integrity of RNA samples were analyzed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Inc., Palo Alto, CA, USA) [ ]. .. Each RNA sample was generated by Agilent SurePrint G3 Human GE 8 × 60 K Microarray kit (Agilent Technologies Canada Inc., Mississauga, ON) with standardized protocol as described [ ]. ..

    Article Title: The genomic landscape of Vk*MYC myeloma highlights shared pathways of transformation between mice and humans
    Article Snippet: .. High-resolution aCGH was performed on Gentra-Puregene-cell-kit (Qiagen) purified DNA from 27 mice with the Sureprint G3 mouse CGH 244 K microarray kit (Agilent Technologies), as previously described . ..

    Hybridization:

    Article Title: Identification of Iron Homeostasis Genes Dysregulation Potentially Involved in Retinopathy of Prematurity Pathogenicity by Microarray Analysis
    Article Snippet: .. Microarray hybridization was performed on Agilent SurePrint G3 Human GE 8 × 60 K Microarray Kit (Agilent Technologies, Santa Clara, CA, USA). .. The arrays were washed consecutively using Gene Expression Wash Buffer Kit (Agilent Technologies) after hybridization.

    Generated:

    Article Title: Knowledge Graph Construction based on Granulosa Cells Transcriptome from polycystic ovary syndrome with Normoandrogen and Hyperandrogen
    Article Snippet: The subjects’ characteristics are provided.The quality and integrity of RNA samples were analyzed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Inc., Palo Alto, CA, USA)18. .. Microarray Data Analysis Each RNA sample was generated by Agilent SurePrint G3 Human GE 8 × 60 K Microarray kit (Agilent Technologies Canada Inc., Mississauga, ON) with a standardized protocol as described19. ..

    Article Title: Knowledge graph construction based on granulosa cells transcriptome from polycystic ovary syndrome with normoandrogen and hyperandrogen
    Article Snippet: The quality and integrity of RNA samples were analyzed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Inc., Palo Alto, CA, USA) [ ]. .. Each RNA sample was generated by Agilent SurePrint G3 Human GE 8 × 60 K Microarray kit (Agilent Technologies Canada Inc., Mississauga, ON) with standardized protocol as described [ ]. ..

    Purification:

    Article Title: The genomic landscape of Vk*MYC myeloma highlights shared pathways of transformation between mice and humans
    Article Snippet: .. High-resolution aCGH was performed on Gentra-Puregene-cell-kit (Qiagen) purified DNA from 27 mice with the Sureprint G3 mouse CGH 244 K microarray kit (Agilent Technologies), as previously described . ..



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    Agilent technologies 244 k microarray data
    a TCGA matched samples (520 from BRCA, 150 from GBM) run on both <t>microarray</t> and RNA-seq were split into a training set (2/3) and test set (1/3). b RNA-seq samples were titrated into each training set, 10% at a time (0–100%), resulting in eleven training sets for each normalization method. Each RNA-seq sample replaces its matched microarray sample. Cross-platform normalization methods were applied to each training set independently. c We used three supervised algorithms to train classifiers (molecular subtype and mutation status of TP53 and PIK3CA in both BRCA and GBM) on each training set and tested on the microarray and RNA-seq test sets. The test sets were projected onto and back out of the training set space using unsupervised Principal Components Analysis to obtain reconstructed test sets. The subtype classifiers trained in step 3A were used to predict on the reconstructed test sets. Pathways regulating gene expression were identified using the unsupervised method PLIER.
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    Agilent technologies comparative genomic hybridization 244 k microarrays
    a TCGA matched samples (520 from BRCA, 150 from GBM) run on both <t>microarray</t> and RNA-seq were split into a training set (2/3) and test set (1/3). b RNA-seq samples were titrated into each training set, 10% at a time (0–100%), resulting in eleven training sets for each normalization method. Each RNA-seq sample replaces its matched microarray sample. Cross-platform normalization methods were applied to each training set independently. c We used three supervised algorithms to train classifiers (molecular subtype and mutation status of TP53 and PIK3CA in both BRCA and GBM) on each training set and tested on the microarray and RNA-seq test sets. The test sets were projected onto and back out of the training set space using unsupervised Principal Components Analysis to obtain reconstructed test sets. The subtype classifiers trained in step 3A were used to predict on the reconstructed test sets. Pathways regulating gene expression were identified using the unsupervised method PLIER.
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    Image Search Results


    a TCGA matched samples (520 from BRCA, 150 from GBM) run on both microarray and RNA-seq were split into a training set (2/3) and test set (1/3). b RNA-seq samples were titrated into each training set, 10% at a time (0–100%), resulting in eleven training sets for each normalization method. Each RNA-seq sample replaces its matched microarray sample. Cross-platform normalization methods were applied to each training set independently. c We used three supervised algorithms to train classifiers (molecular subtype and mutation status of TP53 and PIK3CA in both BRCA and GBM) on each training set and tested on the microarray and RNA-seq test sets. The test sets were projected onto and back out of the training set space using unsupervised Principal Components Analysis to obtain reconstructed test sets. The subtype classifiers trained in step 3A were used to predict on the reconstructed test sets. Pathways regulating gene expression were identified using the unsupervised method PLIER.

    Journal: Communications Biology

    Article Title: Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

    doi: 10.1038/s42003-023-04588-6

    Figure Lengend Snippet: a TCGA matched samples (520 from BRCA, 150 from GBM) run on both microarray and RNA-seq were split into a training set (2/3) and test set (1/3). b RNA-seq samples were titrated into each training set, 10% at a time (0–100%), resulting in eleven training sets for each normalization method. Each RNA-seq sample replaces its matched microarray sample. Cross-platform normalization methods were applied to each training set independently. c We used three supervised algorithms to train classifiers (molecular subtype and mutation status of TP53 and PIK3CA in both BRCA and GBM) on each training set and tested on the microarray and RNA-seq test sets. The test sets were projected onto and back out of the training set space using unsupervised Principal Components Analysis to obtain reconstructed test sets. The subtype classifiers trained in step 3A were used to predict on the reconstructed test sets. Pathways regulating gene expression were identified using the unsupervised method PLIER.

    Article Snippet: For BRCA (520 pairs of matched samples), we used log 2 -transformed, lowess normalized Agilent 244 K microarray data and RSEM (RNA-seq by Expectation Maximization) gene-level count RNA-seq data .

    Techniques: Microarray, RNA Sequencing Assay, Mutagenesis, Expressing