Journal: Cell Death & Disease
Article Title: The SIRT1 activator SRT2104 exerts exercise mimetic effects and promotes Duchenne muscular dystrophy recovery
doi: 10.1038/s41419-025-07595-z
Figure Lengend Snippet: A Fluorescence-based SIRT1 activity assay using crude nuclear extracts of DP muscles, normalized to protein content (WT n = 4; mdx veh n = 9; mdx SRT2104 n = 7). + versus vehicle-treated mdx mice (+++ P < 0.001). Values are expressed as mean ± SEM. B Maps of the populations of the three-dimensional configurations explored by the open apo form of SIRT1 (left, oS1) and by the open holo form of SIRT1 (right, oS1-SRT2104) through molecular dynamics (MD) simulations. The geometric states are reported in the form of correlation maps between the intermolecular number of contacts and the overall radius of gyration. The populations have been normalized to 1 corresponding to the highest population value for each distribution. The family of structures (cS1*) characterized by more compactness and a high number of contacts have been highlighted by a gray rectangle. C Distribution of the backbone heavy atoms (Ca, C’, N) root mean square deviations (RMSDs) of the holo form of two closed configurations of SIRT1, i.e., the one obtained docking with SRT2014 the active structure reported in the literature (black line: cS1-SRT2104, adapted from the PDB ID 5zzh) and the one obtained docking the compact configuration obtained simulating the dynamics of the apo form of the inactive/open conformation (red line: cS1-SRT2104*). D Scheme of all the possible interconversion mechanisms between the open/inactive form and the closed/active form of SIRT1 upon SRT2104 binding (NTD: N terminal domain; CD: catalytic domain): the apo forms of the open and closed conformations of SIRT1 (oS1, cS1); the holo forms of the open and closed conformations of SIRT1 complexed with SRT2104 (oS1-SRT2104, cS1-SRT2104); the apo and holo forms of the final configurations after MD simulations of the open conformation of SIRT1 (cS1*, cS1-SRT2104*). The configurations that do not directly enter the activation mechanisms are shaded. E Representative immunoblot using Acetyl-lysine antibody to detect lysine acetylation pattern in GC muscle homogenates of mdx mice treated or not with SRT2104. Quantification of protein acetylation pattern is provided (right panel) ( mdx veh n = 9; mdx SRT2104 n = 8). * versus vehicle-treated mdx mice (** P < 0.01). Values are expressed as mean ± SEM. F – H Gene Ontology (GO) terms enrichment analyses of deacetylated proteins after SRT2104 treatment.
Article Snippet: These findings are in line with the changes in lysine acetylation profile upon exercise endorsing the idea of SRT2104 as exercise mimetics.
Techniques: Fluorescence, Activity Assay, Muscles, Binding Assay, Activation Assay, Western Blot