Journal: bioRxiv
Article Title: Nuclear Phase Separation Drives NPM1-mutant Acute Myeloid Leukemia
doi: 10.1101/2025.05.23.655671
Figure Lengend Snippet: (A) Stacked bar plots showing distributions of CUT&RUN data from DMSO-treated NPM1 WT/Degron OCI-AML3 cells, with genomic peaks annotated as TSSs, promoters, exons, introns, and intergenic regions. (B) Venn diagram of TSS-promoter peaks from DMSO-treated CUT&RUN sequencing depicting unique genes bound by at least 3 of 4 antibody targets (including XPO1, NUP98, KMT2A, and MENIN) ( n = 235) and NPM1c target genes identified by ChIP-seq ( n = 33, Uckelmann et al. 2023) and annotated table of genes found in both datasets. (C) RDF of NUP98 and HOXA9 in top (red) and bottom (purple) quartiles in comparison to the average ( n = 69). (D) Immunoblotting analysis of protein lysates from OCI-AML3 and IMS-m2 cells treated with DMSO or dTAG for 72h using anti-GFP, anti-NPM1wt and anti-Gapdh-Rhodamine antibodies. (E) Relative mRNA levels of HOXA/MEIS1 in OCI-AML3 cells treated with VTP50469 or Selinexor. (F) Mean CD11b level in OCI-AML3 cells treated with VTP50469, dTAG-13, Selinexor or DMSO for 4 weeks and (G) representative histograms of CD11b level. (H) Representative Integrated Genome Viewer (IGV) tracks (duplicates per sample) for IgG (black), H3K27me3 (Gray), XPO1 (Red), NUP98 (Blue), KMT2A (Green), and MENIN (Orange) treated with DMSO, dTAG-13 (500nM), Eltanexor (100nM), or VTP50469 (300nM) for 24 hours. Fisher’s Exact test was used for statistical testing.
Article Snippet: To inhibit XPO1-NPM1c interactions, cells were treated with 100nM Eltanexor (Selleckchem, S8397) or 100nM Selinexor (Selleckchem, S7252) for 24hrs as previously described .
Techniques: Sequencing, ChIP-sequencing, Comparison, Western Blot