Journal: bioRxiv
Article Title: Hypoxia-induced histone methylation and NF-κB activation in pancreas cancer fibroblasts promote EMT-supportive growth factor secretion
doi: 10.1101/2025.01.30.635486
Figure Lengend Snippet: A) 0082T CAF cells were cultured in 21% or 1% O 2 for 72 hr, and qRT-PCR was performed for the indicated transcripts and normalized to CASC3 . n=3, t-test. B) 0082T CAFs were cultured in 21% or 1% O 2 for 120 hr, and immunofluorescence microscopy was performed for IGF-2. n=3, t-test. C) 430 inhibitors were screened for their ability to counteract hypoxic CAF-induced EMT in HPAF-II cells. HPAF-II cells were treated with hypoxic 0082T CM and inhibitors (1 μM for all compounds) for 120 hr. The ability of each inhibitor to reduce vimentin expression was calculated using positive and negative controls contained on each plate (see Methods). Data are displayed as a plot of the kernel density function (displayed as density) for the percent vimentin inhibition. Inhibitors with >50% reduction in vimentin-positive cells were designated as effective (orange region of the density plot of the inhibitor screen). D) Fraction of vimentin-positive HPAF-II cells treated with CM and MET inhibitors (blue) or MEK inhibitors (orange) compared to untreated and CM-only controls. The percentage of effective inhibitors was calculated for each inhibitor class in the inhibitor library. Representative images are shown of effective (i.e., >50% vimentin reduction) MEKi- or METi-treated samples and controls. E) 0082T cells were cultured in 21% or 1% O 2 for 120 hr and assessed for HGF expression by immunofluorescence microscopy. n=3, t-test. F) Immunofluorescence microscopy was performed on HPAF-II cells treated with hypoxic 0082T CM with linsitinib (IGF1Ri, 2.5 μM), PHA665752 (METi, 2.5 μM), both, or DMSO. G) Immunofluorescence microscopy was performed on KPCY tumor samples to determine fraction of HGF-positive CAFs (PDPN+) in oxygenated (HYP-) or hypoxic (HYP+) tumor regions. n=3, paired t-test. Data are presented as mean ± SEM for bar plots (A, B, E, F) or as a box-and- whisker plot that represent the first quartile (lower box bound), median (center bound), or third quartile (upper box bound) (G). * p <0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001
Article Snippet: PHA665752 (Santa Cruz Biotechnology) and linsitinib (Selleck) were used at 2.5 μM ( , ).
Techniques: Cell Culture, Quantitative RT-PCR, Immunofluorescence, Microscopy, Expressing, Inhibition, Whisker Assay