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pfge profiles  (Applied Maths)

 
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    Applied Maths pfge profiles
    Pfge Profiles, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pfge+profiles/pfge+patterns/pmc09780603-95-2-11
    Average 90 stars, based on 1 article reviews
    pfge profiles - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Occurrence of mcr-1 and mcr-2 colistin resistance genes in porcine Escherichia coli isolates (2010–2020) and genomic characterization of mcr-2 -positive E. coli
    Article Snippet: .. Xba I-generated PFGE profiles were compared using BioNumerics software (Version 6.6, Applied Maths, Belgium) and cluster analysis of Dice similarity indices based on UPGMA. .. DNA for whole genome sequencing was extracted from E. coli isolates using the DNA Blood & Tissue Kit according to the manufacturer‘s instruction (Qiagen, Hilden, Germany), followed by library preparation, using Nextera XT library (Illumina, San Diego, USA).



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    Dendrogram of the PFGE- SmaI and PFGE- ApaI profiles of MRSA isolated from insulin-dependent diabetic individuals generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and their molecular characterization by SCC mec typing and MLST. a. Isolates showing > 80% similarity ( clusters A and B) after digestion with SmaI . b. Band pattern of strain 735 N obtained by digestion with ApaI . N, nasal mucosa; O, oropharyngeal mucosa; S, susceptible; R, resistant. * International clones used as controls

    Journal: Annals of Clinical Microbiology and Antimicrobials

    Article Title: Molecular characterization of methicillin-resistant Staphylococcus aureus among insulin-dependent diabetic individuals in Brazil

    doi: 10.1186/s12941-020-00401-y

    Figure Lengend Snippet: Dendrogram of the PFGE- SmaI and PFGE- ApaI profiles of MRSA isolated from insulin-dependent diabetic individuals generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and their molecular characterization by SCC mec typing and MLST. a. Isolates showing > 80% similarity ( clusters A and B) after digestion with SmaI . b. Band pattern of strain 735 N obtained by digestion with ApaI . N, nasal mucosa; O, oropharyngeal mucosa; S, susceptible; R, resistant. * International clones used as controls

    Article Snippet: Fig. 3 Dendrogram of the PFGE- ApaI profiles of MSSA isolates generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and sequence types obtained by MLST.

    Techniques: Isolation, Generated, Clone Assay

    Dendrogram of the PFGE- ApaI profiles of MSSA isolates generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and sequence types obtained by MLST. Clustering of isolates digested with ApaI that were analyzed by MLST. All isolates except for 735 N were susceptible to methicillin (MSSA). N, nasal mucosa; O, oropharyngeal mucosa; arc C, carbamate kinase; aro E, shikimate dehydrogenase; glp F, glycerol kinase; gmk , guanylate kinase; pta , phosphate acetyltransferase; tpi , triosephosphate isomerase; yqi L, acetyl coenzyme A; ST, sequence type. Isolate 76 N was identified as ST398 in a previous study from our group. Isolate 700O was sent to the curator of the MLST database ( https://pubmlst.org/ ) for identification of the new ST. This isolate was identified as ST 6133

    Journal: Annals of Clinical Microbiology and Antimicrobials

    Article Title: Molecular characterization of methicillin-resistant Staphylococcus aureus among insulin-dependent diabetic individuals in Brazil

    doi: 10.1186/s12941-020-00401-y

    Figure Lengend Snippet: Dendrogram of the PFGE- ApaI profiles of MSSA isolates generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and sequence types obtained by MLST. Clustering of isolates digested with ApaI that were analyzed by MLST. All isolates except for 735 N were susceptible to methicillin (MSSA). N, nasal mucosa; O, oropharyngeal mucosa; arc C, carbamate kinase; aro E, shikimate dehydrogenase; glp F, glycerol kinase; gmk , guanylate kinase; pta , phosphate acetyltransferase; tpi , triosephosphate isomerase; yqi L, acetyl coenzyme A; ST, sequence type. Isolate 76 N was identified as ST398 in a previous study from our group. Isolate 700O was sent to the curator of the MLST database ( https://pubmlst.org/ ) for identification of the new ST. This isolate was identified as ST 6133

    Article Snippet: Fig. 3 Dendrogram of the PFGE- ApaI profiles of MSSA isolates generated by Dice analysis/UPGMA (BioNumerics, Applied Maths) and sequence types obtained by MLST.

    Techniques: Generated, Sequencing