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microarray suite version 5 mas5 algorithms  (Thermo Fisher)


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    Structured Review

    Thermo Fisher microarray suite version 5 mas5 algorithms
    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the <t>MAS5</t> algorithm.
    Microarray Suite Version 5 Mas5 Algorithms, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mas5+(microarray+suite+5)+algorithm/pmc02721853-161-12-11
    Average 86 stars, based on 1 article reviews
    microarray suite version 5 mas5 algorithms - by Bioz Stars, 2026-09
    86/100 stars

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    1) Product Images from "Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues"

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-10-324

    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.
    Figure Legend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Techniques Used: Expressing, Microarray

    Related Articles

    Microarray:

    Article Title: Intraflagellar Transport Gene Expression Associated with Short Cilia in Smoking and COPD
    Article Snippet: .. Microarray data were processed using the MAS5 algorithm (Affymetrix Microarray Suite Version 5 software) and GeneSpring software. ..


    Article Title: Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
    Article Snippet: .. ADAPT – "A Database of Affymetrix Probesets and Transcripts" CH – cross-hybridization LGL – Large Graph Layout MAS5 – MicroArray Suite – Affymetrix algorithm (MAS 5.0) MM – mismatch probe MT – multiple targeting PM – perfect match probe PTP – probeset-transcript-probeset network motif RMA – Robust Multichip Average algorithm TPT – transcript-probeset-transcript network motif ..

    Article Title: Leucine-rich glioma inactivated 3: integrative analyses support its prognostic role in glioma
    Article Snippet: .. Probesets to non-expressed mRNAs were removed using the Affymetrix Microarray Suite 5 calls (MAS5-CALLS) algorithm. ..

    Software:

    Article Title: Intraflagellar Transport Gene Expression Associated with Short Cilia in Smoking and COPD
    Article Snippet: .. Microarray data were processed using the MAS5 algorithm (Affymetrix Microarray Suite Version 5 software) and GeneSpring software. ..

    other:

    Article Title: Comparison and consolidation of microarray data sets of human tissue expression
    Article Snippet: Expression summaries had been derived using the Affymetrix Microarray Suite 5 (MAS5) algorithm with global median scaling.

    Article Title: Effects of filtering by Present call on analysis of microarray experiments
    Article Snippet: The Affymetrix Microarray Suite version 5 (MAS5) algorithm uses the probe-pair data in different ways to calculate the detection call and the signal.

    Article Title: Alteration of gene expression by alcohol exposure at early neurulation
    Article Snippet: The data from independent arrays (each with RNA from a single embryo) for each of the treatments were extracted using the Affymetrix Microarray Suite 5.0 (MAS5) algorithm.

    Article Title: Glioma cells on the run – the migratory transcriptome of 10 human glioma cell lines
    Article Snippet: Array data was processed according to Affymetrix ® MAS5 (Microarray Suite 5) algorithm implemented in Affymetrix ® GCOS (GeneChip Operating Software).



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    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the <t>MAS5</t> algorithm.
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    Image Search Results


    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray