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mas5 microarray analysis suite 5) statistical algorithm  (Thermo Fisher)


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    Thermo Fisher mas5 microarray analysis suite 5) statistical algorithm
    Mas5 Microarray Analysis Suite 5) Statistical Algorithm, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mas5+(microarray+suite+5)+algorithm/pmc04914796-115-26-27
    Average 90 stars, based on 1 article reviews
    mas5 microarray analysis suite 5) statistical algorithm - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: The serine protease inhibitor serpinE2 is a novel target of ERK signaling involved in human colorectal tumorigenesis
    Article Snippet: Data analysis, normalization, average difference and expression for each feature on the chip were performed using Affymetrix Microarray Suite 5.0 (MAS5) with default parameters (Microarray platform, McGill University and Genome Quebec Innovation Centre).

    Article Title: Computational expression deconvolution in a complex mammalian organ
    Article Snippet: All raw data were analyzed using Affymetrix GeneChip5.0 (MAS5) with default normalization to a target signal of 150.

    Article Title: Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
    Article Snippet: To remove unreliable calls and set a threshold for the Affymetrix probesets, we used default settings with the MAS5 method in the affy package of Bioconductor.

    Article Title: DUSP5 and DUSP6 modulate corneal epithelial cell proliferation
    Article Snippet: MAS 5 (Affymetrix, Santa Clara, CA) signal intensities and present/absent status for 9 typical DUSPs were obtained from the Affymetrix 95 A chip-based gene expression studies on intact human corneal epithelium from cadaver donor corneas by Turner et al. [ ].

    Article Title: In Silico Analysis of Arabidopsis thaliana Peroxisomal 6-Phosphogluconate Dehydrogenase
    Article Snippet: Gene expression analyses under different conditions were carried out with the aid of the Gene Expression Omnibus (GEO) database ( http://www.ncbi.nlm.nih.gov/geo/ ) [ ] using Affymetrix Microarray Suite 5.0 (MAS5).

    Hybridization:

    Article Title: Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers
    Article Snippet: .. Both, MAS5 and PLIER, use mm-probes designed by Affymetrix to remove hybridization bias. .. After all, this was considered the stronghold of Affymetrix in paving the way towards absolute measurement of gene expression.

    Software:

    Article Title: Skin Electroporation: Effects on Transgene Expression, DNA Persistence and Local Tissue Environment
    Article Snippet: RNA quality was confirmed by analysis in an Agilent 2100 Bioanalyser (Agilent Technologies, Inc, Paolo Alto, CA, USA) and quantified using a Nanodrop. cRNA synthesis and hybridization to U74v2 GeneChip® arrays was done according to the protocol recommended by the manufacturer (Affymetrix Inc., Santa Clara, CA, USA). .. CEL-files were imported from Affymetrix GeneChip® Operating Software (GCOS), and summary values created using MAS5. ..



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    Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Journal: BMC Genomics

    Article Title: Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues

    doi: 10.1186/1471-2164-10-324

    Figure Lengend Snippet: Overlay of expression detection between MPSS and microarray for sense and antisense transcripts malignant and normal breast epithelium . Human transcriptome clusters (HTR) were used to measure the concordance in detecting sense and antisense transcripts for the Breast Cancer DSA (green), Affymetrix HG U133 Plus 2.0 (blue) and MPSS (red) in both the malignant breast epithelium and normal luminal epithelium. The presence of a MPPS tag was determined if a MPSS tag had at least a count of 3 tpm in these samples. For the two microarray platforms, a HTR cluster was called present when its containing sense (top section) or antisense (bottom section) probe set obtained a present calls with the MAS5 algorithm.

    Article Snippet: Secondly, analysis was performed on the Breast Cancer DSA with the Affymetrix Microarray Suite version 5 (MAS5) algorithms, which uses the probe-pair data to calculate the detection call.

    Techniques: Expressing, Microarray