Journal: The Journal of Biological Chemistry
Article Title: Genome-wide CRISPR activation screen identifies JADE3 as an antiviral activator of NF-kB–dependent IFITM3 expression
doi: 10.1016/j.jbc.2024.107153
Figure Lengend Snippet: JADE3 is required for basal and inducible IFITM3 expression. A , volcano plot of RNA-seq of A549ΔJADE3 cells versus WT cells. An FDR adjusted p value <0.01 ( dotted line ) was considered significant. Data is from three biological replicates. B , scatter plot of ISGs from RNA-seq of A549ΔJADE3 cells versus WT cells. Data is from three biological replicates. IFITM3 is shown in red . C , A549 WT or A549ΔJADE3 cells were either challenged or treated with the labeled condition and IFITM3 mRNA expression was measure by qPCR. Expression was normalized to actin. IAV challenge was done at a MOI of 3 for 8 h. TNF-α and IFN-β treatment was done for 6 h. Data shown is from three independent experiments presented as mean ± SD relative fold change compared to untreated vector control. Data was analyzed using independent two-tail t test for each condition. D , A549 vector control, A549ΔJADE3 complemented with a vector control, or A549ΔJADE3 complemented with JADE3 were either challenged or treated with the labeled condition and IFITM3 mRNA expression was measure by qPCR. Expression was normalized to actin. IAV challenge was done at a MOI of 3 for 8 h. TNF-α and IFN-β treatment was done for 6 h. Data shown is from three independent experiments presented as mean ± SD relative fold change compared to untreated vector control. Data was analyzed using independent one-way ANOVAs with Tukey’s multiple comparisons test for each condition. E , A549 control cells and A549ΔJADE3 cells complemented with either a vector control or JADE3 Flag were challenged with WT PR8 at a MOI of 3. Whole-cell lysis was extracted 8 h postinfection and resolved using SDS-PAGE and probed for IFITM3. Western blot shown is representative of three experiments. ∗ p < 0.05 and ∗∗ p < 0.01. FDR, false discovery rate; IAV, influenza A virus; IFITM3, interferon-induced transmembrane protein 3; JADE3, Jade family PHD zinc finger 3; MOI, multiplicity of infection; ns, not significant; qPCR, quantitative PCR; TNF, tumor necrosis factor.
Article Snippet: Antibodies used include: rabbit anti-JADE3 (Abcam #129495) used at 1:750 to 1:1000, rabbit anti-IFITM3 (Cell Signaling #59212) used at 1:750 to 1:1000, rabbit anti-NF-kB p65 (Cell Signaling #8242) used at 1:1000, rabbit anti-phospho-NF-kB p65 Ser536 (Cell Signaling #3033) used at 1:1000, rabbit anti-H3 (Cell Signaling), anti-Flag horseradish peroxidase (HRP) (Sigma), anti-rabbit IGG HRP (Sigma), and anti-GAPDH HRP (Sigma).
Techniques: Expressing, RNA Sequencing Assay, Labeling, Plasmid Preparation, Lysis, SDS Page, Western Blot, Virus, Infection, Real-time Polymerase Chain Reaction