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dewarping  (Scientifica)

 
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    Scientifica dewarping
    Dewarping, supplied by Scientifica, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/dewarping/product/Scientifica
    Average 90 stars, based on 1 article reviews
    dewarping - by Bioz Stars, 2026-04
    90/100 stars

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    Image Search Results


    Schematic of workflow for 3D image reconstruction, illustrating (A) confocal image tiles, (B) stitched confocal z -stacks, (C) confocal z -stacks cropped to the same x and y dimensions, (D) stacked confocal z-stacks, and (E) the final 3D volume after dewarping, intensity normalization, and alignment.

    Journal: Frontiers in Neuroscience

    Article Title: 3D Reconstruction of the Intracortical Volume Around a Hybrid Microelectrode Array

    doi: 10.3389/fnins.2019.00393

    Figure Lengend Snippet: Schematic of workflow for 3D image reconstruction, illustrating (A) confocal image tiles, (B) stitched confocal z -stacks, (C) confocal z -stacks cropped to the same x and y dimensions, (D) stacked confocal z-stacks, and (E) the final 3D volume after dewarping, intensity normalization, and alignment.

    Article Snippet: To remedy this problem, we developed a custom dewarping program (Supplementary File ) in MATLAB (The MathWorks, Inc., Natick, MA, United States) that interfaced with Imaris (Bitplane AG, Zurich, Switzerland) via the ImarisXT feature.

    Techniques:

    (A) 3D volume rendering of GFAP (green) and NeuN (magenta) after stitching, cropping, and stacking. Dewarping, alignment, and intensity normalization have not yet been performed. (B) Vertical cross section through the 3D volume. The dark bands are dark, out-of-focus optical slices above and below the actual tissue in each section.

    Journal: Frontiers in Neuroscience

    Article Title: 3D Reconstruction of the Intracortical Volume Around a Hybrid Microelectrode Array

    doi: 10.3389/fnins.2019.00393

    Figure Lengend Snippet: (A) 3D volume rendering of GFAP (green) and NeuN (magenta) after stitching, cropping, and stacking. Dewarping, alignment, and intensity normalization have not yet been performed. (B) Vertical cross section through the 3D volume. The dark bands are dark, out-of-focus optical slices above and below the actual tissue in each section.

    Article Snippet: To remedy this problem, we developed a custom dewarping program (Supplementary File ) in MATLAB (The MathWorks, Inc., Natick, MA, United States) that interfaced with Imaris (Bitplane AG, Zurich, Switzerland) via the ImarisXT feature.

    Techniques:

    (A) Schematic of the dewarping algorithm. The brightest contiguous subset of voxels in z is retained while the rest are discarded, resulting in a flatter section. (B) Vertical cross section through a section before dewarping with height scaled 10×. The section is tilted, has a large wrinkle, and has a stitching artifact. (C) After dewarping the tissue is nearly flat (height still scaled 10×).

    Journal: Frontiers in Neuroscience

    Article Title: 3D Reconstruction of the Intracortical Volume Around a Hybrid Microelectrode Array

    doi: 10.3389/fnins.2019.00393

    Figure Lengend Snippet: (A) Schematic of the dewarping algorithm. The brightest contiguous subset of voxels in z is retained while the rest are discarded, resulting in a flatter section. (B) Vertical cross section through a section before dewarping with height scaled 10×. The section is tilted, has a large wrinkle, and has a stitching artifact. (C) After dewarping the tissue is nearly flat (height still scaled 10×).

    Article Snippet: To remedy this problem, we developed a custom dewarping program (Supplementary File ) in MATLAB (The MathWorks, Inc., Natick, MA, United States) that interfaced with Imaris (Bitplane AG, Zurich, Switzerland) via the ImarisXT feature.

    Techniques: