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compound e  (Tocris)


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    Structured Review

    Tocris compound e
    Compound E, supplied by Tocris, used in various techniques. Bioz Stars score: 94/100, based on 37 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/compound/Compound+E/pm42894639-125-155-157
    Average 94 stars, based on 37 article reviews
    compound e - by Bioz Stars, 2026-11
    94/100 stars

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    other:

    Article Title: Identification and Optimization of RNA-Splicing Modulators as Huntingtin Protein-Lowering Agents for the Treatment of Huntington's Disease.
    Article Snippet: Huntington’s disease (HD) is caused by an expanded CAG trinucleotide repeat in exon 1 of the huntingtin (HTT) gene.. We report the design of a series of HTT pre-mRNA splicing modulators that lower huntingtin (HTT) protein, including the toxic mutant huntingtin (mHTT), by promoting insertion of a pseudoexon containing a premature termination codon at the exon 49−50 junction.. The resulting transcript undergoes nonsense-mediated decay, leading to a reduction of HTT mRNA transcripts and protein levels.

    Article Title: Mas-related G protein-coupled receptor C11 (Mrgprc11) induces visceral hypersensitivity in the mouse colon: A novel target in gut nociception?
    Article Snippet: Abbreviations: BAM(8‐22), Bovine adrenal medulla peptide (8‐22); cDNA, complementary DNA; CGRP, Calcitonin gene‐related peptide; CRD, Colorectal distension; Cy3, Cyanine 3; DapB, 4‐hydroxy‐tetrahydrodipicolinate reductase; DRG, Dorsal root ganglion; EMG, Electromyography; FB, Fast blue; FITC, Fluorescein‐isothiocyanate; GPCR, G protein‐coupled receptor; hprt1, Hypoxanthine phosphoribosyltransferase 1; IBD, Inflammatory bowel disease; IBS, Irritable bowel syndrome; il‐1β, Interleukin‐1β; il‐6, Interleukin‐6; MPO, Myeloperoxidase; Mrgpr, Mas‐related G protein‐coupled receptor; NeuN, Neuronal nuclei; PBS, Phosphate‐buffered saline; PFH, Paraformaldehyde; PPIB, Peptidyl‐prolyl cis‐trans isomerase B; qPCR, quantitative PCR; rps29, ribosomal protein s29; tnf‐α, Tumor necrosis factor α; VMR, Visceromotor response.. 1Laboratory of Cell Biology and Histology, University of Antwerp, Antwerp, Belgium 2Laboratory of Experimental Medicine and Pediatrics, Division of Gastroenterology, University of Antwerp, Antwerp, Belgium 3Laboratory of Human Anatomy and Embryology, Division ASTARC, University of Antwerp, Antwerp, Belgium

    Article Title: Methods for treating cancer
    Article Snippet: The compound of Formula (I) (also known as iP300w) can be prepared as described in International Patent Application Publication Number WO2016/044770. iP300w is also commercially available from Tocris Bioscience.

    Concentration Assay:

    Article Title: Dendritic synapse geometry optimizes binaural computation in a sound localization circuit
    Article Snippet: .. For glutamate uncaging, the caged compound (MNI-caged- l -glutamate, Tocris Bioscience) was applied to the external ACSF solution at a concentration of 1 to 5 mM. ..

    ATPase Assay:

    Article Title: Decanoic acid inhibits mTORC1 activity independent of glucose and insulin signaling
    Article Snippet: Immunoprecipitation GFP-TrapA beads were used for Immunoprecipitation of GFP-fusion proteins (Chromotek, gta). .. ATPase assay Dictyostelium cells (wild type or UBXD18- expressing Ddp97-RFP) in the exponential phase of growth were treated for 24 hours with compound (60 μM decanoic acid, 120 μM octanoic acid or 7.5 μM p97 inhibitor DBeQ (Tocris Bioscience, 4417). .. RFP-Trap®A beads were used for the immunoprecipitation of RFP tagged proteins (Ddp97-RFP) (Chromotek, rta).

    Expressing:

    Article Title: Decanoic acid inhibits mTORC1 activity independent of glucose and insulin signaling
    Article Snippet: Immunoprecipitation GFP-TrapA beads were used for Immunoprecipitation of GFP-fusion proteins (Chromotek, gta). .. ATPase assay Dictyostelium cells (wild type or UBXD18- expressing Ddp97-RFP) in the exponential phase of growth were treated for 24 hours with compound (60 μM decanoic acid, 120 μM octanoic acid or 7.5 μM p97 inhibitor DBeQ (Tocris Bioscience, 4417). .. RFP-Trap®A beads were used for the immunoprecipitation of RFP tagged proteins (Ddp97-RFP) (Chromotek, rta).



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    Reaction schemes and LC-MS analysis of Pp UGTs reactions with diosgenin and pennogenin . ( a ) Biosynthesis of <t>trillin</t> mediated by UGT91BP2 and UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of diosgenin. ( b ) Extracted ion chromatograms (EICs) of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and diosgenin showing the formation of trillin, as compared to the authentic trillin standard. Control is the empty expression vector. ( c ) MS spectra of the enzymatic reaction products in hydrogen and sodium ion adducts compared to the fragmentation pattern of the trillin standard. The product molecular ions [M + H] + and [M +Na] + and the feature fragment ion [M + H − Glc] + with m / z 415.32 are marked. Of note, additional peaks observed in the diosgenin EIC ( m / z 415.32) for UGT703R1–3 might correspond to substrate isomeric impurities, in-source adducts, or minor non-enzymatic by-products; these peaks, which arose from the extracted ion flow of the substrate m / z , did not co-elute with the product, trillin , and therefore did not affect the interpretation of the product formation. ( d ) Biosynthesis of pennogenin 3- O -glucoside mediated by the UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of pennogenin. ( e ) EICs of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and pennogenin showing the formation of pennogenin 3- O -glucoside, compared to the control empty expression vector. ( f ) MS/MS spectra ([M + H – Glc] + and [M + H – Glc − H 2 O] + ) of the enzymatic reaction products.
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    Reaction schemes and LC-MS analysis of Pp UGTs reactions with diosgenin and pennogenin . ( a ) Biosynthesis of <t>trillin</t> mediated by UGT91BP2 and UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of diosgenin. ( b ) Extracted ion chromatograms (EICs) of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and diosgenin showing the formation of trillin, as compared to the authentic trillin standard. Control is the empty expression vector. ( c ) MS spectra of the enzymatic reaction products in hydrogen and sodium ion adducts compared to the fragmentation pattern of the trillin standard. The product molecular ions [M + H] + and [M +Na] + and the feature fragment ion [M + H − Glc] + with m / z 415.32 are marked. Of note, additional peaks observed in the diosgenin EIC ( m / z 415.32) for UGT703R1–3 might correspond to substrate isomeric impurities, in-source adducts, or minor non-enzymatic by-products; these peaks, which arose from the extracted ion flow of the substrate m / z , did not co-elute with the product, trillin , and therefore did not affect the interpretation of the product formation. ( d ) Biosynthesis of pennogenin 3- O -glucoside mediated by the UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of pennogenin. ( e ) EICs of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and pennogenin showing the formation of pennogenin 3- O -glucoside, compared to the control empty expression vector. ( f ) MS/MS spectra ([M + H – Glc] + and [M + H – Glc − H 2 O] + ) of the enzymatic reaction products.
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    Reaction schemes and LC-MS analysis of Pp UGTs reactions with diosgenin and pennogenin . ( a ) Biosynthesis of <t>trillin</t> mediated by UGT91BP2 and UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of diosgenin. ( b ) Extracted ion chromatograms (EICs) of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and diosgenin showing the formation of trillin, as compared to the authentic trillin standard. Control is the empty expression vector. ( c ) MS spectra of the enzymatic reaction products in hydrogen and sodium ion adducts compared to the fragmentation pattern of the trillin standard. The product molecular ions [M + H] + and [M +Na] + and the feature fragment ion [M + H − Glc] + with m / z 415.32 are marked. Of note, additional peaks observed in the diosgenin EIC ( m / z 415.32) for UGT703R1–3 might correspond to substrate isomeric impurities, in-source adducts, or minor non-enzymatic by-products; these peaks, which arose from the extracted ion flow of the substrate m / z , did not co-elute with the product, trillin , and therefore did not affect the interpretation of the product formation. ( d ) Biosynthesis of pennogenin 3- O -glucoside mediated by the UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of pennogenin. ( e ) EICs of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and pennogenin showing the formation of pennogenin 3- O -glucoside, compared to the control empty expression vector. ( f ) MS/MS spectra ([M + H – Glc] + and [M + H – Glc − H 2 O] + ) of the enzymatic reaction products.
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    Image Search Results


    Reaction schemes and LC-MS analysis of Pp UGTs reactions with diosgenin and pennogenin . ( a ) Biosynthesis of trillin mediated by UGT91BP2 and UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of diosgenin. ( b ) Extracted ion chromatograms (EICs) of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and diosgenin showing the formation of trillin, as compared to the authentic trillin standard. Control is the empty expression vector. ( c ) MS spectra of the enzymatic reaction products in hydrogen and sodium ion adducts compared to the fragmentation pattern of the trillin standard. The product molecular ions [M + H] + and [M +Na] + and the feature fragment ion [M + H − Glc] + with m / z 415.32 are marked. Of note, additional peaks observed in the diosgenin EIC ( m / z 415.32) for UGT703R1–3 might correspond to substrate isomeric impurities, in-source adducts, or minor non-enzymatic by-products; these peaks, which arose from the extracted ion flow of the substrate m / z , did not co-elute with the product, trillin , and therefore did not affect the interpretation of the product formation. ( d ) Biosynthesis of pennogenin 3- O -glucoside mediated by the UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of pennogenin. ( e ) EICs of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and pennogenin showing the formation of pennogenin 3- O -glucoside, compared to the control empty expression vector. ( f ) MS/MS spectra ([M + H – Glc] + and [M + H – Glc − H 2 O] + ) of the enzymatic reaction products.

    Journal: Synthetic and Systems Biotechnology

    Article Title: Functional characterization of four glycosyltransferases for biosynthesis of steroidal saponins in medicinal plant Paris polyphylla

    doi: 10.1016/j.synbio.2026.04.002

    Figure Lengend Snippet: Reaction schemes and LC-MS analysis of Pp UGTs reactions with diosgenin and pennogenin . ( a ) Biosynthesis of trillin mediated by UGT91BP2 and UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of diosgenin. ( b ) Extracted ion chromatograms (EICs) of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and diosgenin showing the formation of trillin, as compared to the authentic trillin standard. Control is the empty expression vector. ( c ) MS spectra of the enzymatic reaction products in hydrogen and sodium ion adducts compared to the fragmentation pattern of the trillin standard. The product molecular ions [M + H] + and [M +Na] + and the feature fragment ion [M + H − Glc] + with m / z 415.32 are marked. Of note, additional peaks observed in the diosgenin EIC ( m / z 415.32) for UGT703R1–3 might correspond to substrate isomeric impurities, in-source adducts, or minor non-enzymatic by-products; these peaks, which arose from the extracted ion flow of the substrate m / z , did not co-elute with the product, trillin , and therefore did not affect the interpretation of the product formation. ( d ) Biosynthesis of pennogenin 3- O -glucoside mediated by the UGT703R1–3 through transferring glucose from UDP-glucose to the C-3 OH position of pennogenin. ( e ) EICs of the in vitro enzyme activity assays of recombinant UGT91BP2 and UGT703R1–3 with UDP-glucose and pennogenin showing the formation of pennogenin 3- O -glucoside, compared to the control empty expression vector. ( f ) MS/MS spectra ([M + H – Glc] + and [M + H – Glc − H 2 O] + ) of the enzymatic reaction products.

    Article Snippet: Diosgenin, pennogenin, and trillin standard compounds were purchased from Chengdu Push Biotechnology Co., Ltd., and Shanghai Yuanye Biotechnology Co., Ltd. (China).

    Techniques: Liquid Chromatography with Mass Spectroscopy, Transferring, In Vitro, Activity Assay, Recombinant, Control, Expressing, Plasmid Preparation, Tandem Mass Spectroscopy

    Transient expression and characterization of Pp UGTs in Nicotiana benthamiana . ( a ) UHPLC-MS traces of the trillin formation in N. benthamiana leaf extracts transiently expressing UGT91BP2 and UGT703R1–3 with the infiltration of diosgenin substrate, compared to trillin authentic standard and empty vector control. Q1: parent ion; Q3: daughter ion. ( b ) Confocal microscopic images of the localization of UGT91BP2-GFP, UGT703R1-GFP, UGT703R2-GFP and UGT703R3-GFP in N. benthamiana leaves. DAPI (a nuclear-specific fluorescence dye) acts as a nucleus indicator. Scale bars, 20 μm. The experiments were repeated two times with similar results.

    Journal: Synthetic and Systems Biotechnology

    Article Title: Functional characterization of four glycosyltransferases for biosynthesis of steroidal saponins in medicinal plant Paris polyphylla

    doi: 10.1016/j.synbio.2026.04.002

    Figure Lengend Snippet: Transient expression and characterization of Pp UGTs in Nicotiana benthamiana . ( a ) UHPLC-MS traces of the trillin formation in N. benthamiana leaf extracts transiently expressing UGT91BP2 and UGT703R1–3 with the infiltration of diosgenin substrate, compared to trillin authentic standard and empty vector control. Q1: parent ion; Q3: daughter ion. ( b ) Confocal microscopic images of the localization of UGT91BP2-GFP, UGT703R1-GFP, UGT703R2-GFP and UGT703R3-GFP in N. benthamiana leaves. DAPI (a nuclear-specific fluorescence dye) acts as a nucleus indicator. Scale bars, 20 μm. The experiments were repeated two times with similar results.

    Article Snippet: Diosgenin, pennogenin, and trillin standard compounds were purchased from Chengdu Push Biotechnology Co., Ltd., and Shanghai Yuanye Biotechnology Co., Ltd. (China).

    Techniques: Expressing, Plasmid Preparation, Control, Fluorescence

    Journal: eLife

    Article Title: Multiplexed CRISPRi reveals a transcriptional switch between KLF activators and repressors in the maturing neocortex

    doi: 10.7554/eLife.106510

    Figure Lengend Snippet:

    Article Snippet: Chemical compound , Opal 620 , Akoya Biosciences , FP1495001KT , 1:750 –1:1500.

    Techniques: