other:
Virus:
Article Title: Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GABA r2 Receptor (GABRR2) Rabbit Polyclonal Antibody Alomone Labs Cat# AGA-007; RRID:AB_10917755 Anti-Secretagogin, Sheep Polyclonal Antibody BioVendor Cat# RD184120100; RRID:AB_2034062 Bacterial and virus strains AAV2.7m8.hSyn.iGluSnFR D. Dalkara, Institut de la Vision, Paris, France N/A AAV2/1-eF1a-DIO-JEDI-2P F. St-Pierre, Department of Neuroscience, Baylor College of Medicine, Houston, USA N/A Chemicals, peptides, and recombinant proteins Alexa Fluor 568 hydrazide Thermo Fisher Cat# A10437 Deposited data Jupyter notebooks, analysis scripts and data This paper https://github.com/ berenslab/hc-connectivity SBEM dataset e2006 Helmstaedter et al.21 https://www.neuro.mpg.de/ connectomics Experimental models: Organisms/strains Wildtyp mouse line: C57BL/6J The Jackson Laboratory Stock No: 000664 Transgenic mouse line: Cx57cre/+ Own breeding colony Ströh et al.27 Software and algorithms KNOSSOS 5.1 Helmstaedter et al.60 http://www.knossos.app/ FIJI Yadav et al.61 https://imagej.net/software/ fiji/ Scan M M. Müller, MPI for Neurobiology; and T. Euler NA IGOR Pro 6.3 Wavemetrics https://www.wavemetrics. com/products/igorpro Python 3.8 N/A https://www.python.org/ R N/A https://www.r-project.org/ Vaa3D Peng et al.62 https://alleninstitute.org/ what-we-do/brain-science/ research/products-tools/ vaa3d/ NeuronC 6.3.50 Warren et al.47 http://retina.anatomy.upenn. edu/ rob/neuronc.html ..
Article Title: DNMT3a Downregulation Ttriggered Upregulation of GABA A Receptor in the mPFC Promotes Paclitaxel‐Induced Pain and Anxiety in Male Mice
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies DNMT3A (E9P2F) Rabbit mAb Cell signaling Technology Cat# 49768; RRID: AB_2799365 DNMT3A Antibody Cell signaling Technology Cat# 2160; RRID: AB_2263617 DNMT3B (E4I4O) Rabbit mAb (Mouse Specific) Cell signaling Technology Cat #48488; RRID: AB_2799339 DNMT1 (D63A6) XP® Rabbit mAb Cell signaling Technology Cat# 5032; RRID: AB_10548197 TET1 Rabbit Polyclonal Antibody Beyotime Cat# AF8118; RRID: AB_3066763 TET2 Rabbit Polyclonal Antibody Beyotime Cat# AF8119; RRID: AB_3066781 TET3 Rabbit Polyclonal Antibody Beyotime Cat# AF8121; RRID: AB_3066782 GABAA Rα1-6 (E-8) Santa Cruz Biotechnology Cat# sc-376282; RRID: AB_10988210 Anti-GABRB1 antibody [N96/55] Abcam Cat# ab93612; RRID: AB_10565043 Rabbit Anti-GABRB2 Polyclonal Antibody Bioss Cat# bs-12065R; RRID: AB_3066681 Anti-GABA(A) γ1 Receptor Antibody alomone labs Cat# AGA-016; RRID: AB_2340941 Rabbit Anti-GABAA Receptor gamma2 Polyclonal Antibody Bioss Cat# bs-4112R; RRID: AB_11075070 Anti-NMDAR2A/GRIN2A Antibody Boster Cat# BA0613; RRID: AB_3083488 Anti-NMDAR2B/GRIN2B Antibody Boster Cat# BA0614-2; RRID: AB_3083489 Anti-GAPDH Antibody Boster Biological Technology Cat# BA2913; RRID: AB_2560936 Histone H3 Antibody Cell Signaling Technology Cat# 9715; RRID: AB_331563 Anti-c-Fos antibody Abcam Cat# ab222699; RRID: AB_2891049 CaMKIIα (6G9) Mouse mAb Cell signaling Technology Cat# 50049S; RRID: AB_2721906 CaMKIIα/δ Polyclonal Antibody Immunoway Cat# YT0623; RRID: AB_3083585 Anti-GABA Antibody Sigma-Aldrich Cat# A2052; RRID: AB_477652 Goat Anti-Glutamate Transporter, Neuronal (EAAC1) Polyclonal antibody Upstate/EMD Millipore Cat# AB1520; RRID: AB_90732 HRP-conjugated goat anti-rabbit IgG Sigma-Aldrich Cat# AP132P; RRID: AB_3083577 HRP-conjugated goat anti-mouse IgG DIYIBio Cat# DY60203; RRID: AB_3083582 CY3-conjugated goat anti-rabbit IgG Upstate/EMD Millipore Cat# AP132C; RRID: AB_92489 CY3-conjugated rabbit anti-goat IgG Upstate/EMD Millipore Cat# AP106C; RRID: AB_92245 FITC- conjugated donkey anti-mouse IgG Upstate/EMD Millipore Cat# AP192F; RRID: AB_92643 Alexa Fluor® 488-conjugated donkey anti-rabbit IgG Abcam Cat# ab150073; RRID: AB_2636877 Alexa Fluor® 488-conjugated goat anti- mouse IgG Abcam Cat# ab150133; RRID: AB_2576208 Virus Strains rAAV-CMV-EGFP-WPRE-hGH pA, AAV2/9 BrainVTA Cat# PT1316 rAAV-CMV-DNMT3a-Flag-P2A-EGFP- WPRE-hGH pA, AAV2/9 BrainVTA Cat# PT1759 rAAV-CMV-DIO-EGFP-WPRE-hGH pA, AAV2/9 BrainVTA Cat# PT0310 rAAV-CMV-DIO-DNMT3a-Flag-P2A- EGFP-WPRE-hGH pA, AAV2/9 BrainVTA Cat# PT6034 Chemicals Paclitaxel MedChemExpress Cat# HY-B0015 Oxaliplatin MedChemExpress Cat# HY-17371 Cremophor EL Sigma-Aldrich Cat# C5135 Bicuculline MedChemExpress Cat# HY-N0219/CS-5493 Picrotoxin Sigma-Aldrich Cat# R284556 6-cyano-7-nitroquinoxaline-2,3-dione Tocris Cat# 0190 ..
Recombinant:
Article Title: Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GABA r2 Receptor (GABRR2) Rabbit Polyclonal Antibody Alomone Labs Cat# AGA-007; RRID:AB_10917755 Anti-Secretagogin, Sheep Polyclonal Antibody BioVendor Cat# RD184120100; RRID:AB_2034062 Bacterial and virus strains AAV2.7m8.hSyn.iGluSnFR D. Dalkara, Institut de la Vision, Paris, France N/A AAV2/1-eF1a-DIO-JEDI-2P F. St-Pierre, Department of Neuroscience, Baylor College of Medicine, Houston, USA N/A Chemicals, peptides, and recombinant proteins Alexa Fluor 568 hydrazide Thermo Fisher Cat# A10437 Deposited data Jupyter notebooks, analysis scripts and data This paper https://github.com/ berenslab/hc-connectivity SBEM dataset e2006 Helmstaedter et al.21 https://www.neuro.mpg.de/ connectomics Experimental models: Organisms/strains Wildtyp mouse line: C57BL/6J The Jackson Laboratory Stock No: 000664 Transgenic mouse line: Cx57cre/+ Own breeding colony Ströh et al.27 Software and algorithms KNOSSOS 5.1 Helmstaedter et al.60 http://www.knossos.app/ FIJI Yadav et al.61 https://imagej.net/software/ fiji/ Scan M M. Müller, MPI for Neurobiology; and T. Euler NA IGOR Pro 6.3 Wavemetrics https://www.wavemetrics. com/products/igorpro Python 3.8 N/A https://www.python.org/ R N/A https://www.r-project.org/ Vaa3D Peng et al.62 https://alleninstitute.org/ what-we-do/brain-science/ research/products-tools/ vaa3d/ NeuronC 6.3.50 Warren et al.47 http://retina.anatomy.upenn. edu/ rob/neuronc.html ..
Article Title: Fast Regulation of GABA A R Diffusion Dynamics by Nogo-A Signaling.
Article Snippet: .. Schwab (ETH and University of Zurich) Oertle et al., 2003 Goat anti-NgR1 R&D Systems Cat# AF1440; AB_2183731 Rabbit anti-GABAAR g2 Synaptic Systems Cat# 224003; AB_2263066 Rabbit anti-GABAAR g2 Alomone Labs Cat# AGA-005; AB_2039870 Guinea pig anti-GABAAR g2 Synaptic Systems Cat# 224004; AB_10594245 Rabbit anti-GABAAR g2 pSer327 Abcam Cat# ab73183; AB_1268933 Guinea pig anti-GABAAR a2 Synaptic Systems Cat# 224104; AB_10639393 Chicken anti-Synapsin1/2 Synaptic Systems Cat# 106006; AB_2622240 Guinea pig anti-Gephyrin Synaptic Systems Cat# 147318 Rabbit anti-myc Tag Thermofisher scientific Cat# PA1-981; AB_325961 Rabbit anti-GluR1 Merck Millipore Cat# AB1504; AB_2113602 Goat anti-Calnexin SicGen antibodies Cat# AB0037-200; 2333117 Rabbit anti-GAPDH Sigma-Aldrich Cat# G9545; AB_796208 Rabbit anti-VGAT (lumenal domain) Synaptic Systems Cat# 131103C3; AB_887867 anti-rabbit Cy2 Jackson Laboratories Cat# 111-225-144; AB_2338021 anti-rabbit Cy3 Jackson Laboratories Cat# 111-165-144; AB_2338006 anti-rabbit Cy5 Jackson Laboratories Cat# 711-175-152; AB_2340607 anti-chicken Alexa Fluor 488 Jackson Laboratories Cat# 703-545-155; AB_2340375 Anti-chicken Cy5 Jackson Laboratories Cat# 703-175-155; AB_2340365 anti-guinea pig Cy3 Jackson Laboratories Cat# 706-166-148; AB_2340461 anti-rabbit HRP Sigma-Aldrich Cat# A0545; AB_257896 anti-mouse HRP Sigma-Aldrich Cat# A9044; AB_258431 anti-goat HRP Jackson Laboratories Cat# 305-035-003; 2339400 Chemicals, Peptides, and Recombinant Proteins JTE-013 Tocris Cat# 2392 Nogo-A-D20 Gift from M.E. .. Schwab (ETH and University of Zurich) Oertle et al., 2003 Tetrodotoxin citrate Tocris Cat# 1069 CNQX disodium salt Tocris Cat# 1045 Bicuculline methiodide Tocris Cat# 2503 Cyclosporine A Tocris Cat# 1101 EGTA Sigma-Aldrich Cat# E3889 Experimental Models: Organisms/Strains Wistar rats Colony maintained at the animal facility of the University of Magdeburg Charles River C57BL/6J OlaHsd mice Colony maintained at the animal facility of the TU Braunschweig Harlan (Continued on next page) Cell Reports 29, 671–684.e1–e6, October 15, 2019 e1
Transgenic Assay:Article Title: Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GABA r2 Receptor (GABRR2) Rabbit Polyclonal Antibody Alomone Labs Cat# AGA-007; RRID:AB_10917755 Anti-Secretagogin, Sheep Polyclonal Antibody BioVendor Cat# RD184120100; RRID:AB_2034062 Bacterial and virus strains AAV2.7m8.hSyn.iGluSnFR D. Dalkara, Institut de la Vision, Paris, France N/A AAV2/1-eF1a-DIO-JEDI-2P F. St-Pierre, Department of Neuroscience, Baylor College of Medicine, Houston, USA N/A Chemicals, peptides, and recombinant proteins Alexa Fluor 568 hydrazide Thermo Fisher Cat# A10437 Deposited data Jupyter notebooks, analysis scripts and data This paper https://github.com/ berenslab/hc-connectivity SBEM dataset e2006 Helmstaedter et al.21 https://www.neuro.mpg.de/ connectomics Experimental models: Organisms/strains Wildtyp mouse line: C57BL/6J The Jackson Laboratory Stock No: 000664 Transgenic mouse line: Cx57cre/+ Own breeding colony Ströh et al.27 Software and algorithms KNOSSOS 5.1 Helmstaedter et al.60 http://www.knossos.app/ FIJI Yadav et al.61 https://imagej.net/software/ fiji/ Scan M M. Müller, MPI for Neurobiology; and T. Euler NA IGOR Pro 6.3 Wavemetrics https://www.wavemetrics. com/products/igorpro Python 3.8 N/A https://www.python.org/ R N/A https://www.r-project.org/ Vaa3D Peng et al.62 https://alleninstitute.org/ what-we-do/brain-science/ research/products-tools/ vaa3d/ NeuronC 6.3.50 Warren et al.47 http://retina.anatomy.upenn. edu/ rob/neuronc.html ..
Software:Article Title: Retinal horizontal cells use different synaptic sites for global feedforward and local feedback signaling.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-GABA r2 Receptor (GABRR2) Rabbit Polyclonal Antibody Alomone Labs Cat# AGA-007; RRID:AB_10917755 Anti-Secretagogin, Sheep Polyclonal Antibody BioVendor Cat# RD184120100; RRID:AB_2034062 Bacterial and virus strains AAV2.7m8.hSyn.iGluSnFR D. Dalkara, Institut de la Vision, Paris, France N/A AAV2/1-eF1a-DIO-JEDI-2P F. St-Pierre, Department of Neuroscience, Baylor College of Medicine, Houston, USA N/A Chemicals, peptides, and recombinant proteins Alexa Fluor 568 hydrazide Thermo Fisher Cat# A10437 Deposited data Jupyter notebooks, analysis scripts and data This paper https://github.com/ berenslab/hc-connectivity SBEM dataset e2006 Helmstaedter et al.21 https://www.neuro.mpg.de/ connectomics Experimental models: Organisms/strains Wildtyp mouse line: C57BL/6J The Jackson Laboratory Stock No: 000664 Transgenic mouse line: Cx57cre/+ Own breeding colony Ströh et al.27 Software and algorithms KNOSSOS 5.1 Helmstaedter et al.60 http://www.knossos.app/ FIJI Yadav et al.61 https://imagej.net/software/ fiji/ Scan M M. Müller, MPI for Neurobiology; and T. Euler NA IGOR Pro 6.3 Wavemetrics https://www.wavemetrics. com/products/igorpro Python 3.8 N/A https://www.python.org/ R N/A https://www.r-project.org/ Vaa3D Peng et al.62 https://alleninstitute.org/ what-we-do/brain-science/ research/products-tools/ vaa3d/ NeuronC 6.3.50 Warren et al.47 http://retina.anatomy.upenn. edu/ rob/neuronc.html ..
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