6b11 (fluidigm)
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6b11
6b11, supplied by fluidigm, used in various techniques. Bioz Stars score: 92/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3170015b/Anti-Human+Invariant+NKT+(6B11)-170Er/pmc12864045-31-4-8
Average 92 stars, based on 2 article reviews
6b11, supplied by fluidigm, used in various techniques. Bioz Stars score: 92/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3170015b/Anti-Human+Invariant+NKT+(6B11)-170Er/pmc12864045-31-4-8
Average 92 stars, based on 2 article reviews
6b11 - by Bioz Stars,
2026-09
92/100 stars
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Marker:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Staining:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Clinical Proteomics:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Recombinant:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Conjugation Assay:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Software:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , Cytometry:Article Title: Human IRF1 governs macrophagic IFN-γ immunity to mycobacteria. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Recombinant DNA pCMV6-EV Origene Cat# RCPS100001 pCMV6-IRF1-WT-DDK Origene Cat# RC203500 pCMV6-IRF1-p.M85A-DDK This manuscript N/A pCMV6-IRF1-p.M111A-DDK This manuscript N/A pCMV6-IRF1-M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35* This manuscript N/A pCMV6-IRF1-p.Q35*/M85A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M111A-DDK This manuscript N/A pCMV6-IRF1-p.Q35*/M85A/M111A-DDK This manuscript N/A pCMV6-IRF1-p.R129* This manuscript N/A pCMV6-IRF1-p.R129-DDK This manuscript N/A pCMV6-IRF1-p.W11R-DDK This manuscript N/A pCMV6-IRF1-D7-8 This manuscript N/A pCMV6-IRF1-D7-8-DDK This manuscript N/A pCMV6-IRF1-p.A67P-DDK This manuscript N/A pCMV6-IRF1-p.M1_A84del This manuscript N/A pGL4.10[luc2] backbone with three GGAA AGGGAAACCGAAACTGAA repeats Guerin et al.164 Cat# E6651 pGL4.10[luc2] backbon with five GGGAAAGTGAAACTA repeats Hernandez et al.165 N/A pRL-SV40 Promega Cat# E2231 lentiCRISPR v2 Addgene Cat# 52961 psPAX2 Addgene Cat# 12260 pCMV-VSV-G Addgene Cat# 8454 pHXB2-Env NIH-AIDS Reagent Program Cat# 1069 Software and algorithms phip-stat Larman et al.166 https://github.com/lasersonlab/phip-stat Bowtie for alignment of PhIP-Seq raw reads Larman et al.166 http://bowtie-bio.sourceforge.net/index.shtml R The R Project for Statistical Computing https://www.r-project.org DESeq2 Love et al.167 https://bioconductor.org/packages/release/ bioc/html/DESeq2.html Uni-form Mani-fold Approximation and Projection (UMAP) Becht et al.168 v.0.3.5 BVAtools https://bitbucket.org/mugqic/ bvatools https://bitbucket.org/mugqic/bvatools Cell Ranger 10X Genomics v3.0.1 for scRNA and v6.0.1 for CITE-seq DoubletFinder package McGinnis et al.169 v2.0.3 Seurat R package Stuart et al.170 v4.0.2 MAST Finak et al.171 https://github.com/RGLab/MAST gProfiler R package Raudvere et al.172 https://biit.cs.ut.ee/gprofiler/gost FastQC https://www.bioinformatics. babraham.ac.uk/projects/ fastqc/ https://www.bioinformatics.babraham.ac. uk/projects/fastqc/ STAR Dobin et al.173 v2.7.3a RSeQC Wang et al.174 v0.11.2 HTSeq-count Anders et al.175 v3.26.8 edgeR package McCarthy et al.176 N/A HOMER Heinz et al.177 v4.11 ll OPEN ACCESS Cell 186, 621–645.e1–e21, February 2, 2023 e10 Article ll OPEN ACCESS Article Article Title: Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy Article Snippet: Anti-human TCRVa24-Ja18 170Er (clone 6B11) , Article Title: Somatic deficiency of the human E3 ubiquitin ligase CBL in leukocytes impairs B cell but not T cell development and function Article Snippet: 170Er , iNKT , 6B11 , |