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SuperArray Bioscience Corporation web-based pcr array data analysis software
Web Based Pcr Array Data Analysis Software, supplied by SuperArray Bioscience Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/web-based+software/web+based+software+package+for+the+pcr+array+system/pmc02627485-140-7-16
Average 90 stars, based on 1 article reviews
web-based pcr array data analysis software - by Bioz Stars, 2026-11
90/100 stars

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Article Title: CD69 Targeting Enhances Anti-vaccinia Virus Immunity
Article Snippet: Gene expression was measured with a web-based 423 software package for the PCR Array System 424 (http://www.superarray.com/pcr/arrayanalysis.php), which automatically performs all 425 ΔΔCt-based fold-change calculations from the specific uploaded raw threshold cycle 426 data.

Article Title: Liver and kidney damage induced by 4-aminopyridine in a repeated dose (28 days) oral toxicity study in rats: gene expression profile of hybrid cell death.
Article Snippet: 4-Aminopyridine (4-AP) is an orphan drug indicated for the treatment of neuromuscular disorders.. There is a great controversy around the use of this drug because of its narrow safety index and because a large number of adverse effects have been reported.. Moreover, it was shown to induce cell death in different cell lines, being reported mainly apoptosis and necrosis as the principal pathways of cell death mediated by blockage of K channels or the Na, K-ATPase, but until now it was not described in vivo cell death induced by 4-aminipyridine.

Article Title: Zoledronic acid directly suppresses cell proliferation and induces apoptosis in highly tumorigenic prostate and breast cancers
Article Snippet: Final calculations were made using a web-based PCR array data analysis tool (Superarray, Fredrick, MD, USA) with 1-fold difference set as baseline; however, only those over 1.5-fold were considered significant.

Article Title: Human Cord Blood Stem Cell-Modulated Regulatory T Lymphocytes Reverse the Autoimmune-Caused Type 1 Diabetes in Nonobese Diabetic (NOD) Mice
Article Snippet: The data were analyzed using a web-based PCR array data analysis software provided by the manufacturer (SuperArray).

Gene Expression:

Article Title: CD69 Targeting Enhances Anti-vaccinia Virus Immunity
Article Snippet: The RT 2 Profiler array was probed according to the manufacturer’s protocol using the Profiler PCR array system and SYBR green/fluorescein quantitative PCR (qPCR) master mix (SABiosciences) with an ABI 7500 Fast sequence analyzer (Applied Biosystems). .. Gene expression was measured with a web-based software package for the PCR array system ( http://www.superarray.com/pcr/arrayanalysis.php ), which automatically performs all ΔΔ C T -based fold change calculations from the specific uploaded raw threshold cycle ( C T ) data. .. For qPCR assays, RNA was treated with RQ1 RNase-free DNase (Promega) prior to cDNA synthesis from 5 μg of total RNA with GoScript reverse transcriptase (Promega) using a combination of random primers and oligo(dT).

Article Title: Oxidative stress and gene expression profiling of cell death pathways in alpha-cypermethrin-treated SH-SY5Y cells.
Article Snippet: Abbreviations α-CYPER Alpha-cypermethin AKT1 V-akt murine thymoma viral oncogene homolog 1 APAF1 Apoptotic peptidase activating factor 1 ATG3 Autophagy-related 3 homolog (S. cerevisiae) ATG5 Autophagy-related 5 homolog (S. cerevisiae) ATG7 Autophagy-related 7 homolog (S. cerevisiae) ATG12 Autophagy-related 12 homolog (S. cerevisiae) ATP6V1G2 ATPase, H + transporting, lysosomal 13 kDa, V1 subunit G2 BCL2 B cell CLL/lymphoma 2 BCL2L1 Bcl2-like 1 BIRC2 Baculoviral IAP repeat-containing 2 BMF Bcl2 modifying factor CASP3 Caspase 3, apoptosis-related cysteine peptidase CASP7 Caspase 7, apoptosis-related cysteine peptidase CASP9 Caspase 9, apoptosis-related cysteine peptidase COMMD4 COMM domain containing 4 CTSB Cathepsin B Abstract In this study, we investigated the induction of oxidative stress and apoptosis in human neuroblastoma cell line SH-SY5Y in response to alpha-cypermethrin (α-CYPER) exposure.. MTT and LDH assays were carried out to assess the α-CYPER cytotoxicity.. The IC50 value for α-CYPER was calculated to be 78.3 ± 2.98 μM for the MTT assay and 71.5 ± 3.94 μM for LDH assay.

Software:

Article Title: CD69 Targeting Enhances Anti-vaccinia Virus Immunity
Article Snippet: The RT 2 Profiler array was probed according to the manufacturer’s protocol using the Profiler PCR array system and SYBR green/fluorescein quantitative PCR (qPCR) master mix (SABiosciences) with an ABI 7500 Fast sequence analyzer (Applied Biosystems). .. Gene expression was measured with a web-based software package for the PCR array system ( http://www.superarray.com/pcr/arrayanalysis.php ), which automatically performs all ΔΔ C T -based fold change calculations from the specific uploaded raw threshold cycle ( C T ) data. .. For qPCR assays, RNA was treated with RQ1 RNase-free DNase (Promega) prior to cDNA synthesis from 5 μg of total RNA with GoScript reverse transcriptase (Promega) using a combination of random primers and oligo(dT).

Article Title: Oxidative stress and gene expression profiling of cell death pathways in alpha-cypermethrin-treated SH-SY5Y cells.
Article Snippet: Abbreviations α-CYPER Alpha-cypermethin AKT1 V-akt murine thymoma viral oncogene homolog 1 APAF1 Apoptotic peptidase activating factor 1 ATG3 Autophagy-related 3 homolog (S. cerevisiae) ATG5 Autophagy-related 5 homolog (S. cerevisiae) ATG7 Autophagy-related 7 homolog (S. cerevisiae) ATG12 Autophagy-related 12 homolog (S. cerevisiae) ATP6V1G2 ATPase, H + transporting, lysosomal 13 kDa, V1 subunit G2 BCL2 B cell CLL/lymphoma 2 BCL2L1 Bcl2-like 1 BIRC2 Baculoviral IAP repeat-containing 2 BMF Bcl2 modifying factor CASP3 Caspase 3, apoptosis-related cysteine peptidase CASP7 Caspase 7, apoptosis-related cysteine peptidase CASP9 Caspase 9, apoptosis-related cysteine peptidase COMMD4 COMM domain containing 4 CTSB Cathepsin B Abstract In this study, we investigated the induction of oxidative stress and apoptosis in human neuroblastoma cell line SH-SY5Y in response to alpha-cypermethrin (α-CYPER) exposure.. MTT and LDH assays were carried out to assess the α-CYPER cytotoxicity.. The IC50 value for α-CYPER was calculated to be 78.3 ± 2.98 μM for the MTT assay and 71.5 ± 3.94 μM for LDH assay.

Article Title: Oxidation modifies the structure and function of the extracellular matrix generated by human coronary artery endothelial cells
Article Snippet: *The Heart Research Institute, 7 Eliza Street, Newtown, Sydney, NSW 2042, Australia †Faculty of Medicine, University of Sydney, Sydney, NSW 2006, Australia ‡Institute of Cell Biology, Histology and Embryology, Center for Molecular Medicine, Medical University of Graz, Graz, Austria §Graduate School of Biomedical Engineering, The University of New South Wales, Kensington, NSW, Australia ¶Institute of Molecular Biology and Biochemistry, Center for Molecular Medicine, Medical University of Graz, Graz, Austria

Polymerase Chain Reaction:

Article Title: CD69 Targeting Enhances Anti-vaccinia Virus Immunity
Article Snippet: The RT 2 Profiler array was probed according to the manufacturer’s protocol using the Profiler PCR array system and SYBR green/fluorescein quantitative PCR (qPCR) master mix (SABiosciences) with an ABI 7500 Fast sequence analyzer (Applied Biosystems). .. Gene expression was measured with a web-based software package for the PCR array system ( http://www.superarray.com/pcr/arrayanalysis.php ), which automatically performs all ΔΔ C T -based fold change calculations from the specific uploaded raw threshold cycle ( C T ) data. .. For qPCR assays, RNA was treated with RQ1 RNase-free DNase (Promega) prior to cDNA synthesis from 5 μg of total RNA with GoScript reverse transcriptase (Promega) using a combination of random primers and oligo(dT).

Article Title: Oxidative stress and gene expression profiling of cell death pathways in alpha-cypermethrin-treated SH-SY5Y cells.
Article Snippet: Abbreviations α-CYPER Alpha-cypermethin AKT1 V-akt murine thymoma viral oncogene homolog 1 APAF1 Apoptotic peptidase activating factor 1 ATG3 Autophagy-related 3 homolog (S. cerevisiae) ATG5 Autophagy-related 5 homolog (S. cerevisiae) ATG7 Autophagy-related 7 homolog (S. cerevisiae) ATG12 Autophagy-related 12 homolog (S. cerevisiae) ATP6V1G2 ATPase, H + transporting, lysosomal 13 kDa, V1 subunit G2 BCL2 B cell CLL/lymphoma 2 BCL2L1 Bcl2-like 1 BIRC2 Baculoviral IAP repeat-containing 2 BMF Bcl2 modifying factor CASP3 Caspase 3, apoptosis-related cysteine peptidase CASP7 Caspase 7, apoptosis-related cysteine peptidase CASP9 Caspase 9, apoptosis-related cysteine peptidase COMMD4 COMM domain containing 4 CTSB Cathepsin B Abstract In this study, we investigated the induction of oxidative stress and apoptosis in human neuroblastoma cell line SH-SY5Y in response to alpha-cypermethrin (α-CYPER) exposure.. MTT and LDH assays were carried out to assess the α-CYPER cytotoxicity.. The IC50 value for α-CYPER was calculated to be 78.3 ± 2.98 μM for the MTT assay and 71.5 ± 3.94 μM for LDH assay.

Article Title: Oxidation modifies the structure and function of the extracellular matrix generated by human coronary artery endothelial cells
Article Snippet: *The Heart Research Institute, 7 Eliza Street, Newtown, Sydney, NSW 2042, Australia †Faculty of Medicine, University of Sydney, Sydney, NSW 2006, Australia ‡Institute of Cell Biology, Histology and Embryology, Center for Molecular Medicine, Medical University of Graz, Graz, Austria §Graduate School of Biomedical Engineering, The University of New South Wales, Kensington, NSW, Australia ¶Institute of Molecular Biology and Biochemistry, Center for Molecular Medicine, Medical University of Graz, Graz, Austria



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