watershed algorithm cell segmentation software (MathWorks Inc)
Structured Review

Watershed Algorithm Cell Segmentation Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/watershed+algorithm+cell+segmentation+software/pmc09972508-6-8-32
Average 90 stars, based on 1 article reviews
Images
1) Product Images from "Mechanics of neurulation: from classical to current perspectives on the physical mechanics that shape, fold, and form the neural tube"
Article Title: Mechanics of neurulation: from classical to current perspectives on the physical mechanics that shape, fold, and form the neural tube
Journal: Birth defects research
doi: 10.1002/bdra.23557
Figure Legend Snippet: Useful image analysis software to measure cell and tissue morphological changes. Many software packages allow researchers to quantifiy kinematic and morphometric data from live images. This table describes advantages and disadvantages of specific software used for general quantitative image analysis and software with specific uses for cell segmentation which allows data for individual cells to be derived in semi-automated or automated fashion and typically used with confocal images of apical cell surfaces. To our knowledge no single method is completely error-free and must therefore allow the user to manually correct erroneously segmented cells.
Techniques Used: Software, Derivative Assay, Cell Tracking Assay
Related Articles
Software:Article Title: Mechanics of neurulation: from classical to current perspectives on the physical mechanics that shape, fold, and form the neural tube Article Snippet: EpiTools ( Heller et al., 2016 ) , Watershed Algorithm Cell Segmentation Software , Semi-automated segmentation – allows some user correction Built-in GUI Provides analysis of cell junctions Outputs data on select morphological parameters Interfaces with ImageJ Accounts for surface curvature Matlab based GUI. .. SIESTA ( Fernandez-Gonzalez and Zallen, 2011 ) , Article Title: Mechanics of neurulation: from classical to current perspectives on the physical mechanics that shape, fold, and form the neural tube Article Snippet: TissueMiner ( Etournay et al., 2016 ) , Cell shape analysis toolkit , R and Python based Used in conjunction with TissueAnalyzer Provides database structure for morphology information derived from segmented images Has built in analysis tool to derive multiscale analyses of deformation and cell tracking Provides graphical data visualization capabilities Allows user to create personalized data analysis algorithms to be added to analysis library (require programming knowledge) Provides 2D analysis Not fully open source. .. EpiTools ( Heller et al., 2016 ) , |