Review



visium spatial transcriptomics analysis 144  (Spatial Transcriptomics Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 86
      Buy from Supplier

    Structured Review

    Spatial Transcriptomics Inc visium spatial transcriptomics analysis 144
    Visium Spatial Transcriptomics Analysis 144, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/data+spatial+transcriptomics+visium/pm40875358-79-2-3
    Average 86 stars, based on 1 article reviews
    visium spatial transcriptomics analysis 144 - by Bioz Stars, 2026-10
    86/100 stars

    Images

    Related Articles

    Spatial Transcriptomics:

    Article Title: Phase Separation Competent TIA1 Couples Glycolytic Shutdown to CD8 + T-Cell Activation and Shapes the Efficacy of Intravesical BCG in Bladder Cancer
    Article Snippet: .. Visium spatial-transcriptomics data (GEO GSE171351 ) were processed in Seurat v4; TIA1, EPCAM, and CD8A spot-level expression was visualized in ggplot2 (RStudio, Version: 2025.09.2+418). ..

    Article Title: A technical comparison of spatial transcriptomics platforms across six cancer types.
    Article Snippet: .. To systematically evaluate the technical performance of current spatial transcriptomics technologies, we profiled six FFPE tumor types using five commercially available platforms: Visium v1, Visium v2 (CytAssist), VisiumHD, Xenium, and CosMx. ..


    Article Title: Integrative transcriptomic analysis reveals microglial metabolic-inflammatory crosstalk of HK2–HSPA5–TNF axis after intracerebral hemorrhage
    Article Snippet: .. Spatial transcriptomics analysis leveraged preprocessed Visium data from lesional (hemorrhage-affected) and contralateral hemispheres across nine timepoints (Naive to D28). ..

    Article Title: Ghent Pathology 2025. 15th Joint Meeting of the BDIAP and The Pathological Society joint with the Belgian Society of Pathology, 24-26 June 2025.
    Article Snippet: .. Additionally, we assessed SEQUOIA’s ability to infer spatially resolved expression by comparing predicted values with ground truth obtained from Visium spatial transcriptomics data. ..

    Article Title: CEBPB expression in tumor cells drives immune evasion in colorectal cancer via CTLA4 upregulation in T cells
    Article Snippet: .. For comparative analyses, we also used the publicly available human colorectal cancer scRNA-seq dataset (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178341) and a Visium spatial-transcriptomics dataset from Zenodo (https://doi.org/10.5281/zenodo.7551712). .. HJY, DY, JDL, HS, and SMK performed in vitro and in vivo experiments, CHP, KK, D ow nloaded from https://spj.science.org on February 04, 2026 32 and HS analyzed scRNA-seq data, HRS analyzed whole-exome sequencing, immunohistochemistry, and public data, CP analyzed public data, MJK, JWP, SBR, SYJ, KJP, and TYK provided human tumor tissue and analyzed clinical data, YL analyzed Lunit SCOPE IO data, JK supervised scRNA-seq analysis, JKW supervised public data and pathological analysis, and SWH provided concept of the study and supervised in vitro and in vivo experiments.

    Article Title: Hist2Cell: Deciphering fine-grained cellular architectures from histology images.
    Article Snippet: .. 39 We selected slices that included both Visium Spatial Transcriptomics (ST) data and 20× magnification H&E images. ..

    Article Title: Single Cell and Spatial Transcriptomics Define a Proinflammatory and Profibrotic Niche After Kidney Injury.
    Article Snippet: .. Spatial Transcriptomics VisiumData Processing: Mouse kidney samples stored in a frozen state were embedded withOCT compound and stored at −80 °C. .. For the preparation of sections for Visium Spatial Transcriptomics sequencing, samples were equilibrated at−18 °C and a 10 μmthick section was cut onto the active sequencing area (6 mm x 6 mm) of a spatial barcoded slide.

    Expressing:

    Article Title: Phase Separation Competent TIA1 Couples Glycolytic Shutdown to CD8 + T-Cell Activation and Shapes the Efficacy of Intravesical BCG in Bladder Cancer
    Article Snippet: .. Visium spatial-transcriptomics data (GEO GSE171351 ) were processed in Seurat v4; TIA1, EPCAM, and CD8A spot-level expression was visualized in ggplot2 (RStudio, Version: 2025.09.2+418). ..

    Article Title: Ghent Pathology 2025. 15th Joint Meeting of the BDIAP and The Pathological Society joint with the Belgian Society of Pathology, 24-26 June 2025.
    Article Snippet: .. Additionally, we assessed SEQUOIA’s ability to infer spatially resolved expression by comparing predicted values with ground truth obtained from Visium spatial transcriptomics data. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: A technical comparison of spatial transcriptomics platforms across six cancer types.
    Article Snippet: .. To systematically evaluate the technical performance of current spatial transcriptomics technologies, we profiled six FFPE tumor types using five commercially available platforms: Visium v1, Visium v2 (CytAssist), VisiumHD, Xenium, and CosMx. ..



    Similar Products

    316 visium spatial transcriptomics analysis sta  (Spatial Transcriptomics Inc)
    86
    Spatial Transcriptomics Inc 316 visium spatial transcriptomics analysis sta
    316 Visium Spatial Transcriptomics Analysis Sta, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/316+analysis+spatial+sta+transcriptomics+visium/pm41339935-180-0-2
    Average 86 stars, based on 1 article reviews
    316 visium spatial transcriptomics analysis sta - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    visium hd spatial transcriptome analysis  (10X Genomics)
    86
    10X Genomics visium hd spatial transcriptome analysis
    Visium Hd Spatial Transcriptome Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/expression+gene+slides+spatial+visium/pm41061294-235-0-5
    Average 86 stars, based on 1 article reviews
    visium hd spatial transcriptome analysis - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    visium spatial transcriptomics analysis 144  (Spatial Transcriptomics Inc)
    86
    Spatial Transcriptomics Inc visium spatial transcriptomics analysis 144
    Visium Spatial Transcriptomics Analysis 144, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/data+spatial+transcriptomics+visium/pm40875358-79-2-3
    Average 86 stars, based on 1 article reviews
    visium spatial transcriptomics analysis 144 - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    visium spatial transcriptomic v1 analysis  (10X Genomics)
    86
    10X Genomics visium spatial transcriptomic v1 analysis
    Visium Spatial Transcriptomic V1 Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/expression+gene+slides+spatial+visium/pmc12338066-576-8-13
    Average 86 stars, based on 1 article reviews
    visium spatial transcriptomic v1 analysis - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    visium spatial gene expression analysis  (10X Genomics)
    86
    10X Genomics visium spatial gene expression analysis
    Visium Spatial Gene Expression Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/expression+gene+slides+spatial+visium/pmc12703572-40-5-3
    Average 86 stars, based on 1 article reviews
    visium spatial gene expression analysis - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    analysis ○ xenium st data preparation ○ visium st data  (Spatial Transcriptomics Inc)
    86
    Spatial Transcriptomics Inc analysis ○ xenium st data preparation ○ visium st data
    Analysis ○ Xenium St Data Preparation ○ Visium St Data, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/analysis+data+data+preparation+st+st+visium+xenium+%E2%97%8B+%E2%97%8B/pmc12208317__mmc8-240-108-105
    Average 86 stars, based on 1 article reviews
    analysis ○ xenium st data preparation ○ visium st data - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier
    ffpe visium cytassist spatial transcriptomic analysis  (10X Genomics)
    90
    10X Genomics ffpe visium cytassist spatial transcriptomic analysis
    Ffpe Visium Cytassist Spatial Transcriptomic Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/ffpe+visium+cytassist+spatial+transcriptomic+analysis/pm40514380-407-0-18
    Average 90 stars, based on 1 article reviews
    ffpe visium cytassist spatial transcriptomic analysis - by Bioz Stars, 2026-10
    90/100 stars
    		  Buy from Supplier
    visium hd data analysis  (10X Genomics)
    86
    10X Genomics visium hd data analysis
    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG <t>using</t> <t>10x</t> <t>Visium</t> HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.
    Visium Hd Data Analysis, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/visium+analysis/hd+visium/pm40287118-146-0-8
    Average 86 stars, based on 1 article reviews
    visium hd data analysis - by Bioz Stars, 2026-10
    86/100 stars
    		  Buy from Supplier

    Image Search Results


    Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG using 10x Visium HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.

    Journal: Pharmacological research

    Article Title: Neuroprotectin D1 and GPR37 protect against chemotherapy-induced peripheral neuropathy and the transition from acute to chronic pain.

    doi: 10.1016/j.phrs.2025.107746

    Figure Lengend Snippet: Fig. 8. Spatial transcriptomics analysis of GPR37 expression in human DRG. (A) Schematic diagram of flowchart for spatial transcriptomics analysis in human DRG using 10x Visium HD platform and the gene expression matrices for the 8×8 μm bins. (B) Colocalization of GPR37 with CALCA in peptidergic neuron (indicated by filled arrows). Scale bar, 20 µm. The filled arrow with a cross indicates a bin with GPR37 expression only. (C) Co-expression of GPR37 and CSF1R in macrophages (indicated by an open arrow). Scale bar, 20 µm. The filled arrow with a cross indicates GPR37 expression in neuron. (D) Co-expression of GPR37 and CD163+ in M2 macrophage (indicated with open arrows). Scale bar, 20 µm. Left panels in B-D are H&E images showing the morphology of human DRG neurons, surrounded by many non-neuronal cells.

    Article Snippet: Visium HD Data Analysis: Space Ranger software (v3.1.2 10x Genomics) was used to process raw FASTQ files, align the reads to the reference transcriptome, and generate gene expression matrices for the default 2um, 8um, and 16um binning in each sample.

    Techniques: Expressing, Gene Expression