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AUTODOCK GmbH vina open source program
Vina Open Source Program, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/vina+open-source+program/vina+open+source+program/pmc08103605-94-1-0
Average 90 stars, based on 1 article reviews
vina open source program - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Selection of a DNA Aptamer against Zearalenone and Docking Analysis for Highly Sensitive Rapid Visual Detection with Label-Free Aptasensor.
Article Snippet: Subscriber access provided by Kaohsiung Medical University is published by the American Chemical Society.. 1155 Sixteenth Street N.W., Washington, DC 20036 Published by American Chemical Society.. Copyright © American Chemical Society.


Article Title: Molecular dynamics simulations to understand glycosaminoglycan interactions in the free- and protein-bound states.
Article Snippet: Other docking approaches to avail of GAGeprotein coordinates include open source tool AUTODOCK (autodock.scripps.edu), a web-based tool ClusPro (cluspro.bu.edu) and HADDOCK (wenmr.science.uu.nl/).

Article Title: The edible seaweed Laminaria japonica contains cholesterol analogues that inhibit lipid peroxidation and cyclooxygenase enzymes
Article Snippet: Docking was performed to investigate the molecular interactions between the pure compounds and cyclooxygenase using the AutoDock Vina open-source program (ver.

Article Title: A novel borax-specific ssDNA aptamer screened by high-throughput SELEX and its colorimetric assay with aggregation of AuNPs
Article Snippet: Borax is considered highly toxic and a strong carcinogen, but it is widely used as a toughening and brightening additive in food processing.. At present, there is no definitive standard assay for the direct identification of borax in foods in most countries.. In this study, borax-specific aptamers with high affinity and specificity were selected using Systematic Evolution of Ligands by Exponential Enrichment (SELEX) with high throughput sequencing.

Article Title: Molecular Docking and Dynamics Simulation of Protein β-Tubulin and Antifungal Cyclic Lipopeptides
Article Snippet: Docking of the alkaloid taxol, used as the native ligand, with the modeled β-tubulin protein was simulated using the AutoDock Vina open source program and a genetic algorithm.

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Article Title: Lactate attenuates astrocytic inflammation by inhibiting ubiquitination and degradation of NDRG2 under oxygen-glucose deprivation conditions.
Article Snippet: .. A comparative molecular docking analysis between lactate and NDRG2 was carried out using AutoDock Vina opensource software (Trott et al. 2010). .. To conduct the in vivo ubiquitination assay, ‘lactate-’ or ‘lactate + ’ culture medium was generated by excluding or adding (respectively) the proteasome inhibitor MG132 (10 μM, Selleck, Berlin, Germany; S2619) from the culture during 8 h of OGD conditions prior to harvesting.



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