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Genomatix gmbh transfac database
Transfac Database, supplied by Genomatix gmbh, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transfac+program/transfac+database/pmc03091243-235-13-15
Average 90 stars, based on 1 article reviews
transfac database - by Bioz Stars, 2026-10
90/100 stars

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Binding Assay:

Article Title: The transcription regulation analysis of Ctenopharyngodon idellus PKR and PKZ genes.
Article Snippet: Protein kinase R (PKR), the double-stranded RNA-activated protein kinase, exists in mammalian and fish.. PKZ, a PKR-like protein kinase containing Z-DNA binding domains, just exists in fish.. PKR and PKZ work synergistically in the antiviral defense by inhibiting intracellular proteins translation.

Article Title: Transcriptional fine-tuning of microRNA-223 levels directs lineage choice of human hematopoietic progenitors
Article Snippet: .. 18 , 25 , 30 TF binding sites within the distal and proximal regulatory regions of miR-223 were predicted by the MatInspector Professional ( http://www.genomatix.de/ ) software packages and Alibaba 2.149 50 using the TRANSFAC database of TFs ( http://www.gene-regulation.com/pub/programs.htlm ). .. Genomic regions on miR-223 were amplified using primers designed by the Primer express software (Applied Biosystem).

Article Title: Promoter characterization and role of CRE in the basal transcription of the rat SNAT2 gene.
Article Snippet: doi: 10.1152/ajpendo.00459.2010 300:E1092-E1102, 2011.. First published 8 March 2011;Am J Physiol Endocrinol Metab Nimbe Torres and Armando R. Tovar Victor Ortiz, Gabriela Alemán, Martín Escamilla-Del-Arenal, Félix Recillas-Targa, transcription of the rat SNAT2 gene Promoter characterization and role of CRE in the basal You might find this additional info useful... 39 articles, 20 of which you can access for free at: This article cites http://ajpendo.physiology.org/content/300/6/E1092.full#ref-list-1 including high resolution figures, can be found at: Updated information and services http://ajpendo.physiology.org/content/300/6/E1092.full can be found at: Metabolism American Journal of Physiology - Endocrinology and about Additional material and information http://www.the-aps.org/publications/ajpendo This information is current as of April 28, 2013.. Physiological Society.

Article Title: Coordinated transcriptional control of adipocyte triglyceride lipase (Atgl) by transcription factors Sp1 and peroxisome proliferator–activated receptor γ (PPARγ) during adipocyte differentiation
Article Snippet: .. Sp1 binding to the Atgl promoter negatively regulates Atgl transcription˗˗˗ Analysis of approximately 3 kb upstream of the Atgl transcription start site by Genomatix and TRANSFAC matrices revealed a putative Sp1 binding site at the minimal promoter (-50 to -36 bp). ..

Software:

Article Title: Transcriptional fine-tuning of microRNA-223 levels directs lineage choice of human hematopoietic progenitors
Article Snippet: .. 18 , 25 , 30 TF binding sites within the distal and proximal regulatory regions of miR-223 were predicted by the MatInspector Professional ( http://www.genomatix.de/ ) software packages and Alibaba 2.149 50 using the TRANSFAC database of TFs ( http://www.gene-regulation.com/pub/programs.htlm ). .. Genomic regions on miR-223 were amplified using primers designed by the Primer express software (Applied Biosystem).

Sequencing:

Article Title: Coordinated transcriptional control of adipocyte triglyceride lipase ( Atgl ) by transcription factors Sp1 and peroxisome proliferator–activated receptor γ (PPARγ) during adipocyte differentiation
Article Snippet: .. Analysis of approximately 3 kb of the DNA sequence immediately upstream of the Atgl transcription start site by Genomatix and TRANSFAC matrices revealed a putative Sp1-binding site at the minimal promoter (−50 to −36 bp). ..

other:

Article Title: Transgenic Overexpression of Abcb11 Enhances Biliary Bile Salt Outputs, But Does Not Affect Cholesterol Cholelithogenesis in Mice
Article Snippet: Potential transcription factor bindings sites were identified using MatInspector 2.2 based on the Transfac Database 4.0 (Genomatix Software, München, Germany).



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Image Search Results


21 target genes of Hypoxia-inducible factor 1α (HIF-1α) out of 216 DEGs in diabetic mice through  TRANSFAC  ® .

Journal: Molecules

Article Title: Therapeutic Effects of HIF-1α on Bone Formation around Implants in Diabetic Mice Using Cell-Penetrating DNA-Binding Protein

doi: 10.3390/molecules24040760

Figure Lengend Snippet: 21 target genes of Hypoxia-inducible factor 1α (HIF-1α) out of 216 DEGs in diabetic mice through TRANSFAC ® .

Article Snippet: The software program, TRANSFAC ® (Qiagen N.V., Valencia, CA, USA), was used to select the target genes of HIF-1α.

Techniques: Binding Assay, Membrane, Ubiquitin Proteomics