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transcriptome shotgun assembly sequence database (tsa)  (Biotechnology Information)

 
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    Biotechnology Information transcriptome shotgun assembly sequence database (tsa)
    Transcriptome Shotgun Assembly Sequence Database (Tsa), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/transcriptome+shotgun+assembly+sequence+database/national+center+for+biotechnology+information+transcriptome+shotgun+assembly+database/pm29292833-72-16-14
    Average 90 stars, based on 1 article reviews
    transcriptome shotgun assembly sequence database (tsa) - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Virus:

    Article Title: Identification of RNA Virus-Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets.
    Article Snippet: .. By using these to search the National Center for Biotechnology Information Transcriptome Shotgun Assembly database, we identified 5,867 contigs encoding RNA virus RdRps or fragments thereof and analyzed their diversity, taxonomic classification, phylogeny, and host associations. ..

    Article Title: Exploring the transcriptome of immature stages of Ornithodoros hermsi , the soft-tick vector of tick-borne relapsing fever
    Article Snippet: .. The DNA coding sequences (CDS) with an open reading frame (ORF) of at least 100 nucleotides were extracted based on BLASTp results from several databases, including subsets of the non-redundant and transcriptome shotgun assembly from National Center for Biotechnology Information (NCBI) databases (chelicerata, Rickettsiales, and Borreliaceae), RefSeq invertebrate ( https://ftp.ncbi.nlm.nih.gov/refseq/release/invertebrate/ ), RefSeq protozoa ( https://ftp.ncbi.nlm.nih.gov/refseq/release/protozoa/ ), RefSeq mitochondrion ( https://ftp.ncbi.nlm.nih.gov/refseq/release/mitochondrion/ ), tick genomes , mouse genome, and virus-phage. ..

    Sequencing:

    Article Title: Genome Assembly and Structural Variation Analysis of Luffa acutangula Provide Insights on Flowering Time and Ridge Development
    Article Snippet: .. Genome assemblies, raw genome and transcriptome sequencing reads have been deposited in the National Center for Biotechnology Information BioProject database under the accession PRJNA1042866. ..

    Article Title: Multi-omic analyses unveil contrasting composition and spatial distribution of specialized metabolites in seeds of Camelina sativa and other Brassicaceae.
    Article Snippet: L ea Barreda, C eline Brosse, St ephanie Boutet, Nicolas Klewko, Delphine De Vos, Tracy Francois, Boris Collet, Damaris Grain, C eline Boulard, Jean Chrisologue Totozafy, Benôıt Bernay, Franc ois Perreau, Lo€ıc Lepiniec, Lo€ıc Rajjou and Massimiliano Corso Universit e Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin for Plant Sciences (IJPB), Versailles 78000, France, and Plateforme Proteogen, SFR ICORE 4206, Universit e de Caen Basse-Normandie, Esplanade de la Paix, Caen Cedex 14032, France

    Article Title: Cloning grass carp (Ctenopharyngodon idella) ccdc3 and its expression affected by nutrition state, insulin, and glucagon.
    Article Snippet: Funding information Key Scientific and Technology Research Project of Henan Province, Grant/Award Number: 232102110121; Key Scientific Research Projects of Henan Province, Grant/Award Number: 23A240004; National Natural Science Foundation of China, Grant/Award Numbers: 32273149, 32303020 Abstract As an adipokine, coiled-coil domain-containing 3 (CCDC3) plays multiple physiological roles in fatty liver, lipid metabolism, and abdominal obesity.. Grass carp was selected as the experimental animal in this study to investigate the roles of Ccdc3 in teleosts.. Results showed that the open reading frame (ORF) of cloned ccdc3 was 831 bp and encoded 276 amino acids.

    other:

    Article Title: Folate-Mediated One-Carbon Metabolism in the Crustacean Copepod Calanus finmarchicus: Identification of Transcripts and Relative Expression across Development
    Article Snippet: The E. affinis sequences were used to mine the transcriptome shotgun assembly (TSA) database from the National Center for Biotechnology Information (NCBI) limiting the searches to C. finmarchicus transcriptome (PRJNA236528) (search date October 2022).

    Article Title: Identification of two putative novel deltapartitiviruses and an enamovirus in coriander transcriptomes.
    Article Snippet: In recent times, novel plant viral sequences are being increasingly discovered by probing the plant transcriptomeassembled contigs available in Transcriptome Shotgun Assembly (TSA) database of National Centre for Biotechnology Information (Bejerman et al. 2021, 2022; Bejerman and Debat 2022; Sidharthan et al. 2022a, 2022b, 2022c; Sidharthan et al. 2023).



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    Image Search Results


    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation

    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation