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transcriptome shotgun assembly sequences database (fasta.gz format)  (Mendeley Ltd)

 
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    Structured Review

    Mendeley Ltd transcriptome shotgun assembly sequences database (fasta.gz format)
    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled <t>transcriptomes</t> of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.
    Transcriptome Shotgun Assembly Sequences Database (Fasta.Gz Format), supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/transcriptome+shotgun+assembly+sequence+database/transcriptomics+dataset/pmc07327806-11-2-18
    Average 90 stars, based on 1 article reviews
    transcriptome shotgun assembly sequences database (fasta.gz format) - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon"

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    Journal: Data in Brief

    doi: 10.1016/j.dib.2020.105917

    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.
    Figure Legend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Techniques Used:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.
    Figure Legend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Techniques Used:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.
    Figure Legend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Techniques Used:


    Figure Legend Snippet:

    Techniques Used: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation

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    Sequencing:

    Article Title: Fostamatinib, a Spleen Tyrosine Kinase Inhibitor, Exerts Anti-Inflammatory Activity via Inhibiting STAT1/3 Signaling Pathways
    Article Snippet: .. The transcriptome sequencing raw data for this study has been uploaded in Mendeley at https://data.mendeley.com/datasets/x6nnxygn48/1 . ..

    Article Title: AMPD3 promotes doxorubicin-induced cardiomyopathy through HSP90α-mediated ferroptosis
    Article Snippet: .. • Transcriptome sequencing and metabolomics results have been deposited at Mendeley Data and are publicly available (Mendeley Data: https://data.mendeley.com/datasets/nfds5sfrg2/1 ; Mendeley Data: https://data.mendeley.com/datasets/3fg4p9dd9v/1 ). ..

    Article Title: CRISPR/Cas9-mediated SHP-1-knockout T cells combined with simvastatin enhances anti-tumor activity in humanized-PDX HCC model
    Article Snippet: .. Transcriptome sequencing , This article; Mendeley Data , https://doi.org/10.17632/gnkgbjpc2x.1 https://doi.org/10.17632/gnkgbjpc2x.1. ..

    Article Title: Salivary gland cancer organoids are valid for preclinical genotype-oriented medical precision trials.
    Article Snippet: Y-27632 Nacalai Tesque Cat# 18188-04 Dexamethasone Sigma-Aldrich Cat# D4902 Recombinant human Noggin Peprotech Cat# 120-03 TrypLE Express Thermo Fisher Scientific Cat# 12605-028 Recovery Cell Culture Freezing Medium Thermo Fisher Scientific Cat# 12648-010 iPGell GenoStaff Cat# PG20-1 Platinum PCR SuperMix High Fidelity Thermo Fisher Scientific Cat# 12532016 ExoSAP-IT Thermo Fisher Scientific Cat# 78250 Big Dye Terminator Cycle Sequencing Kit Thermo Fisher Scientific Cat# 433745 Agencourt CleanSEQ Beckman Coulter Cat# A29151 AccuPrime Taq DNA Polymerase System Invitrogen Cat# 12339016 ZytoLight SPEC MAML2 Dual Color Break Apart Probe ZytoVision Cat# Z-2014-200 PathVysion HER-2 DNA Probe Kit Abbott Cat# 02J01-030 alamarBlue Cell Viability Reagent Thermo Fisher Scientific Cat# DAL1025 Cisplatin Fujifilm Wako Cat# 033-20091 Rapamycin Selleck Cat# S1039 Selumetinib Selleck Cat# S1008 Tipifarnib Selleck Cat# S1453 Bicalutamide Santa Cruz Biotechnology Cat# sc-202976 Trastuzumab Pfizer Cat# 2117990 .. Transcriptome sequence: Raw and analyzed data This paper GEO: GSE223554 Unprocessed data This paper Mendeley Data: https://data.mendeley.com/ datasets/s2njncjd5s/draft?a=dee7fe11-ec584475-b1b2-745a8c77407f Oligonucleotides Primers for Sanger sequence and RT-PCR, see Table S15 This paper N/A ..

    Article Title: Fostamatinib, a Spleen Tyrosine Kinase Inhibitor, Exerts Anti-Inflammatory Activity via Inhibiting STAT1/3 Signaling Pathways
    Article Snippet: .. The transcriptome sequencing raw data for this study has been uploaded in Mendeley at https://data.mendeley.com/ datasets/x6nnxygn48/1. .. This work was supported by Natural Science Foundation of Henan Province (232300420227); Henan Sunshine Medical Health Development Foundation Liver and Bile project funding (HKP2023005); Province Medical Science and Technology Research Program (Jointly Co-construction) Project of Henan (LHGJ20220416).

    Article Title: AMPD3 promotes doxorubicin-induced cardiomyopathy through HSP90α-mediated ferroptosis
    Article Snippet: .. Transcriptome sequencing , this article , Mendeley Data: http://data.mendeley.com/datasets/nfds5sfrg2/1. .. Metabolomics , this article , Mendeley Data: http://data.mendeley.com/datasets/3fg4p9dd9v/1.

    other:

    Article Title: Transcriptomics and metabolomics reveal the mechanism of cognitive impairment induced by long-term selenium deficiency in mice.
    Article Snippet: Transcriptomics and metabolomics reveal the mechanism of cognitive impairment induced by long-term selenium deficiency in mice (Mendeley Data)



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    Image Search Results


    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation

    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation