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bowtie short-read aligner  (Johns Hopkins HealthCare)

 
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    Johns Hopkins HealthCare bowtie short-read aligner
    Bowtie Short Read Aligner, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/transcriptome+shotgun+assembly+sequence+database/bowtie+short+read+aligner/pm23344706-54-10-13
    Average 90 stars, based on 1 article reviews
    bowtie short-read aligner - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Analysis of RNA-Seq data reveals involvement of JAK/STAT signalling during leg regeneration in the cricket Gryllus bimaculatus.
    Article Snippet: Each read was mapped to the assembled transcripts using the Bowtie short-read aligner (Johns Hopkins University).



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    Image Search Results


    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are openly accessible at Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation

    Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques:

    Journal: Data in Brief

    Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

    doi: 10.1016/j.dib.2020.105917

    Figure Lengend Snippet:

    Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

    Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation