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AUTODOCK GmbH tools (adt) software
Tools (Adt) Software, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tools+(adt)+software/tools++adt++software/pmc12267398-113-2-2
Average 90 stars, based on 1 article reviews
tools (adt) software - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Binding Assay:

Article Title: Identification of steroidal cardenolides from Calotropis procera as novel HIV-1 PR inhibitors: A molecular docking & molecular dynamics simulation study
Article Snippet: The ligands were further prepared for docking using Autodock Tools (ADT) software.

Article Title: In vitro and in silico study and pharmacokinetic analysis of the acaricidal effectiveness of Cersium arvense extract against Rhipicephalus microplus
Article Snippet: Subsequently, the AutoDock Tools (ADT) software was employed to prepare the ligand structures, which included adjustments for nonpolar hydrogens, Gasteiger charges, and rotatable bonds.

Article Title: Research on the Interaction Mechanism and Structural Changes in Human Serum Albumin with Hispidin Using Spectroscopy and Molecular Docking
Article Snippet: Using Autodock 4.2, Autodock tools (ADT) software and the Lamarckian genetic algorithm were used to fit the combination of hispidin and HSA.

Article Title: Host-guest complexation of (pyridinyltriazolylthio) acetic acid with cucurbit[n]urils (n=6,7,8): Molecular calculations and thermogravimetric analysis
Article Snippet: The preparation of the CB[n]s hosts and a PTTA ligand was performed with AutoDock Tools (ADT) software, version 1.5.7 [43].

Article Title: In silico prospective analysis of the medicinal plants activity on the CagA oncoprotein from Helicobacter pylori
Article Snippet: AutoDock Tools 4 (ADT) software[ ] was used to detect and calculate the points and angles of torsion, respectively.

Article Title: In-vitro and computational analysis of Urolithin-A for anti-inflammatory activity on Cyclooxygenase 2 (COX-2)
Article Snippet: For the generation of both grids and docking parameter files, the Autodock Tools (ADT) package is used, which includes the gridparameter files(gpf) and docking parameter file (dpf) ( ).

Article Title: Copper(II) complex with <i>N</i> , <i>N</i> <sup>’</sup> -dibenzyl 1,2-diaminocyclohexane: structure, DFT, DNA binding, docking, and catecholase-like activity
Article Snippet: Mononuclear copper(II) complex [Cu(DBDACH)2](ClO4)2 (1) was synthesized with a cyclohexane-1,2-diamine-based bidentate ligand, N,N-dibenzyl 1,2-diaminocyclohexane (DBDACH) and characterized by various spectroscopic techniques.. The structure of the complex was determined by single-crystal X-ray analysis and shows a distorted square planar geometry around the copper center.. DNA binding interactions were interrogated by UV-Vis spectroscopic titration, circular dichroism, and docking studies.

Software:

Article Title: Identification of steroidal cardenolides from Calotropis procera as novel HIV-1 PR inhibitors: A molecular docking & molecular dynamics simulation study
Article Snippet: The ligands were further prepared for docking using Autodock Tools (ADT) software.

Article Title: In vitro and in silico study and pharmacokinetic analysis of the acaricidal effectiveness of Cersium arvense extract against Rhipicephalus microplus
Article Snippet: Subsequently, the AutoDock Tools (ADT) software was employed to prepare the ligand structures, which included adjustments for nonpolar hydrogens, Gasteiger charges, and rotatable bonds.

Article Title: Research on the Interaction Mechanism and Structural Changes in Human Serum Albumin with Hispidin Using Spectroscopy and Molecular Docking
Article Snippet: Using Autodock 4.2, Autodock tools (ADT) software and the Lamarckian genetic algorithm were used to fit the combination of hispidin and HSA.

Article Title: Host-guest complexation of (pyridinyltriazolylthio) acetic acid with cucurbit[n]urils (n=6,7,8): Molecular calculations and thermogravimetric analysis
Article Snippet: The preparation of the CB[n]s hosts and a PTTA ligand was performed with AutoDock Tools (ADT) software, version 1.5.7 [43].

Article Title: In silico prospective analysis of the medicinal plants activity on the CagA oncoprotein from Helicobacter pylori
Article Snippet: AutoDock Tools 4 (ADT) software[ ] was used to detect and calculate the points and angles of torsion, respectively.

Article Title: In-vitro and computational analysis of Urolithin-A for anti-inflammatory activity on Cyclooxygenase 2 (COX-2)
Article Snippet: For the generation of both grids and docking parameter files, the Autodock Tools (ADT) package is used, which includes the gridparameter files(gpf) and docking parameter file (dpf) ( ).

Article Title: Copper(II) complex with <i>N</i> , <i>N</i> <sup>’</sup> -dibenzyl 1,2-diaminocyclohexane: structure, DFT, DNA binding, docking, and catecholase-like activity
Article Snippet: Mononuclear copper(II) complex [Cu(DBDACH)2](ClO4)2 (1) was synthesized with a cyclohexane-1,2-diamine-based bidentate ligand, N,N-dibenzyl 1,2-diaminocyclohexane (DBDACH) and characterized by various spectroscopic techniques.. The structure of the complex was determined by single-crystal X-ray analysis and shows a distorted square planar geometry around the copper center.. DNA binding interactions were interrogated by UV-Vis spectroscopic titration, circular dichroism, and docking studies.



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