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genbank tblastn algorithms (Biotechnology Information)

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Biotechnology Information genbank tblastn algorithms
Genbank Tblastn Algorithms, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/the+tblastn+algorithm/tblastn+algorithm/pm32969327-54-16-14
Average 90 stars, based on 1 article reviews

genbank tblastn algorithms - by Bioz Stars, 2026-09

90/100 stars

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Sequencing:

Article Title: Plant elicitor peptides promote plant defences against nematodes in soybean
Article Snippet: .. Candidate PROPEPs from soybean were identified by the application of tblastn algorithms to expressed sequence tag (EST) data and genomic sequences available through the National Center for Biotechnology Information (NCBI) and SoyBase, with expected values set to 10,000 or more. ..

Article Title: Use of the soybean sucrose synthase promoter to increase plant seed lipid content
Article Snippet: .. Specifically, the Arabidopsis Sucrose Synthase 2 amino acid sequence (SEQ ID NO: 2) was used with the TBLASTN algorithm provided by National Center for Biotechnology Information (NCBI) with default parameters except the Filter Option was set to OFF. ..

Article Title: Use of the soybean sucrose synthase promoter to increase plant seed lipid content
Article Snippet: Sequence information from the Medicago truncatula Genome Project is available at the J. Craig Venter Institute. .. Specifically, the Glyma13g917420 amino acid sequence (SEQ ID NO: 6) was used with the TBLASTN algorithm provided by National Center for Biotechnology Information (NCBI) with default parameters except the Filter Option was set to OFF. .. The Medicago truncatula homolog identified corresponded to Medtr4g124660.2 and the predicted CDS and corresponding amino acid sequences for Medtr4g124660.2 are set forth in SEQ ID NO: 79 and SEQ ID NO: 80, respectively.

Genomic Sequencing:

Construct:

Article Title: Identifications, Characteristics, and Expression Patterns of Small Heat Shock Protein Genes in a Major Mulberry Pest, Glyphodes pyloalis (Lepidoptera: Pyralidae)
Article Snippet: The PrimeScript RT reagent Kit (Takara, Dalian, China) was used to produce first-strand DNA, followed by reverse transcription following the manufacturer’s recommendations, and the synthesized cDNA was stored at −20°C. .. cDNA sequences encoding sHSPs were retrieved from a previously constructed G. pyloalis transcriptome dataset (GenBank SRR9959773 ) using the TBLASTN algorithm ( E -value < 1 × 10 −5 ), and all candidate genes were manually checked using BLASTX ( E -value < 1 × 10 −5 ) against the GenBank nonredundant (nr) protein database at the National Center for Biotechnology Information (NCBI). ..

other:

Article Title: Widespread occurrence of natural genetic transformation of plants by Agrobacterium.
Article Snippet: Key message Naturally transgenic plant species occur on an unexpectedly large scale.. Abstract Agrobacterium-mediated gene transfer leads to the formation of crown galls or hairy roots, due to expression of transferred T-DNA genes.. Spontaneous regeneration of transformed cells can produce natural transformants carrying cellular T-DNA (cT-DNA) sequences of bacterial origin.