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stereo seq transcriptomics set v1 3  (Complete Genomics Inc)


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    Structured Review

    Complete Genomics Inc stereo seq transcriptomics set v1 3
    Stereo Seq Transcriptomics Set V1 3, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 98/100, based on 34 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/stereo-seq+transcriptomics+set+v1%2E3/Stereo-seq+Transcriptomics+Set/pm41107232-359-17-21
    Average 98 stars, based on 34 article reviews
    stereo seq transcriptomics set v1 3 - by Bioz Stars, 2026-10
    98/100 stars

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    Related Articles

    Spatial Transcriptomics:

    Article Title: Single-cell Stereo-seq reveals regulatory mechanisms driving regeneration of injured proximal tubules during AKI.
    Article Snippet: .. Stereo-seq spatial transcriptomics data (BGI) were normalized using SCTransform in Seurat Spots with <1,000 total UMIs were filtered. ..

    Article Title: Somatic structural variants drive upper tract urothelial carcinoma muscle invasiveness via activation of TPX2 transcription.
    Article Snippet: .. 6 www.thelancet.com Vol 125 ▪, 2026 Spatial transcriptomics data generation and analysis Formalin-fixed paraffin-embedded (FFPE) urothelial carcinoma tissue sections were profiled using the Stereo-seq spatial transcriptomics platform (MGI, China) according to the manufacturer’s protocols. ..

    Article Title: A Foundational Generative Model for Cross-platform Unified Enhancement of Spatial Transcriptomics
    Article Snippet: .. These include sequencing-based: Visium (probe-based and polyA-based) , Visium CytAssist , and VisiumHD (all Visium platforms are products of 10X Genomics), Spatial Transcriptomics (Spatial Transcriptomics AB), Stereo-seq (BGI), BMK S1000 (BMKGENE), and Open-ST , and image-based platforms: Xenium (10X Genomics) and CosMx (Nanostring). ..

    Article Title: Somatic structural variants drive upper tract urothelial carcinoma muscle invasiveness via activation of TPX2 transcription
    Article Snippet: .. Formalin-fixed paraffin-embedded (FFPE) urothelial carcinoma tissue sections were profiled using the Stereo-seq spatial transcriptomics platform (MGI, China) according to the manufacturer's protocols. ..

    Formalin-fixed Paraffin-Embedded:

    Article Title: Somatic structural variants drive upper tract urothelial carcinoma muscle invasiveness via activation of TPX2 transcription.
    Article Snippet: .. 6 www.thelancet.com Vol 125 ▪, 2026 Spatial transcriptomics data generation and analysis Formalin-fixed paraffin-embedded (FFPE) urothelial carcinoma tissue sections were profiled using the Stereo-seq spatial transcriptomics platform (MGI, China) according to the manufacturer’s protocols. ..

    Article Title: Somatic structural variants drive upper tract urothelial carcinoma muscle invasiveness via activation of TPX2 transcription
    Article Snippet: .. Formalin-fixed paraffin-embedded (FFPE) urothelial carcinoma tissue sections were profiled using the Stereo-seq spatial transcriptomics platform (MGI, China) according to the manufacturer's protocols. ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: .. We used the STOmics Stereo-seq Transcriptomics Set for FFPE, which uses random primers to capture and sequence RNAs in situ . ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: across Countries with Varying Stomach Cancer Incidence Kie Kyon Huang1, Takeshi Hagihara1, Benedict Shi Xiang Lian1, Zhi Xuan Ong1, Shen Kiat Lim1, Roxanne Hui Heng Chong2, Supriya Srivastava2, Jason Xing Kang3, May Yin Lee4, Angie Lay-Keng Tan1, Minghui Lee1, Shamaine Wei Ting Ho4, Siti Aishah Binte Abdul Ghani1, Clara Shi Ya Ng1, Ruanyi Liang1, Lin Liu2, Su Ting Tay1, Xuewen Ong1, Feng Zhu2, Hui Chen5, Zhen Li5, Tiing Leong Ang6, Takuji Gotoda7,8, Robert J. Huang9, Christopher J.L.. Khor1,10, Hyun-Soo Kim11, Louis Ho Shing Lau12,13, Yi-Chia Lee14, Ayaka Takasu7,8, Ming Teh15, Mann Yie Thian16, Wai Leong Tam4,17,18,19, Xin Lu20, Sunny H. Wong3, Jimmy B.Y.. So21, Hyunsoo Chung22, Jonathan Lee2,23,24,25, Khay Guan Yeoh2,25, and Patrick Tan1,4,26,27,28; for the Singapore Gastric Cancer Consortium D ow nloaded from http://aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -25-0778/3726001/cd-25-0778.pdf by guest on 17 January 2026 AACRJournals.orgOF2 | CANCER DISCOVERY XXX 2026 intRoduction Gastric cancer is the fifth most common malignancy worldwide and the fourth leading cause of cancer death, accounting for 769,000 deaths globally in 2020 (1).

    Sequencing:

    Article Title: A Foundational Generative Model for Cross-platform Unified Enhancement of Spatial Transcriptomics
    Article Snippet: .. These include sequencing-based: Visium (probe-based and polyA-based) , Visium CytAssist , and VisiumHD (all Visium platforms are products of 10X Genomics), Spatial Transcriptomics (Spatial Transcriptomics AB), Stereo-seq (BGI), BMK S1000 (BMKGENE), and Open-ST , and image-based platforms: Xenium (10X Genomics) and CosMx (Nanostring). ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: .. We used the STOmics Stereo-seq Transcriptomics Set for FFPE, which uses random primers to capture and sequence RNAs in situ . ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: across Countries with Varying Stomach Cancer Incidence Kie Kyon Huang1, Takeshi Hagihara1, Benedict Shi Xiang Lian1, Zhi Xuan Ong1, Shen Kiat Lim1, Roxanne Hui Heng Chong2, Supriya Srivastava2, Jason Xing Kang3, May Yin Lee4, Angie Lay-Keng Tan1, Minghui Lee1, Shamaine Wei Ting Ho4, Siti Aishah Binte Abdul Ghani1, Clara Shi Ya Ng1, Ruanyi Liang1, Lin Liu2, Su Ting Tay1, Xuewen Ong1, Feng Zhu2, Hui Chen5, Zhen Li5, Tiing Leong Ang6, Takuji Gotoda7,8, Robert J. Huang9, Christopher J.L.. Khor1,10, Hyun-Soo Kim11, Louis Ho Shing Lau12,13, Yi-Chia Lee14, Ayaka Takasu7,8, Ming Teh15, Mann Yie Thian16, Wai Leong Tam4,17,18,19, Xin Lu20, Sunny H. Wong3, Jimmy B.Y.. So21, Hyunsoo Chung22, Jonathan Lee2,23,24,25, Khay Guan Yeoh2,25, and Patrick Tan1,4,26,27,28; for the Singapore Gastric Cancer Consortium D ow nloaded from http://aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -25-0778/3726001/cd-25-0778.pdf by guest on 17 January 2026 AACRJournals.orgOF2 | CANCER DISCOVERY XXX 2026 intRoduction Gastric cancer is the fifth most common malignancy worldwide and the fourth leading cause of cancer death, accounting for 769,000 deaths globally in 2020 (1).

    Transcriptomics:

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: .. We used the STOmics Stereo-seq Transcriptomics Set for FFPE, which uses random primers to capture and sequence RNAs in situ . ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: across Countries with Varying Stomach Cancer Incidence Kie Kyon Huang1, Takeshi Hagihara1, Benedict Shi Xiang Lian1, Zhi Xuan Ong1, Shen Kiat Lim1, Roxanne Hui Heng Chong2, Supriya Srivastava2, Jason Xing Kang3, May Yin Lee4, Angie Lay-Keng Tan1, Minghui Lee1, Shamaine Wei Ting Ho4, Siti Aishah Binte Abdul Ghani1, Clara Shi Ya Ng1, Ruanyi Liang1, Lin Liu2, Su Ting Tay1, Xuewen Ong1, Feng Zhu2, Hui Chen5, Zhen Li5, Tiing Leong Ang6, Takuji Gotoda7,8, Robert J. Huang9, Christopher J.L.. Khor1,10, Hyun-Soo Kim11, Louis Ho Shing Lau12,13, Yi-Chia Lee14, Ayaka Takasu7,8, Ming Teh15, Mann Yie Thian16, Wai Leong Tam4,17,18,19, Xin Lu20, Sunny H. Wong3, Jimmy B.Y.. So21, Hyunsoo Chung22, Jonathan Lee2,23,24,25, Khay Guan Yeoh2,25, and Patrick Tan1,4,26,27,28; for the Singapore Gastric Cancer Consortium D ow nloaded from http://aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -25-0778/3726001/cd-25-0778.pdf by guest on 17 January 2026 AACRJournals.orgOF2 | CANCER DISCOVERY XXX 2026 intRoduction Gastric cancer is the fifth most common malignancy worldwide and the fourth leading cause of cancer death, accounting for 769,000 deaths globally in 2020 (1).

    In Situ:

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: .. We used the STOmics Stereo-seq Transcriptomics Set for FFPE, which uses random primers to capture and sequence RNAs in situ . ..

    Article Title: Mutational Signatures and Clonal Hematopoiesis in Intestinal Metaplasia across Countries with Varying Stomach Cancer Incidence
    Article Snippet: across Countries with Varying Stomach Cancer Incidence Kie Kyon Huang1, Takeshi Hagihara1, Benedict Shi Xiang Lian1, Zhi Xuan Ong1, Shen Kiat Lim1, Roxanne Hui Heng Chong2, Supriya Srivastava2, Jason Xing Kang3, May Yin Lee4, Angie Lay-Keng Tan1, Minghui Lee1, Shamaine Wei Ting Ho4, Siti Aishah Binte Abdul Ghani1, Clara Shi Ya Ng1, Ruanyi Liang1, Lin Liu2, Su Ting Tay1, Xuewen Ong1, Feng Zhu2, Hui Chen5, Zhen Li5, Tiing Leong Ang6, Takuji Gotoda7,8, Robert J. Huang9, Christopher J.L.. Khor1,10, Hyun-Soo Kim11, Louis Ho Shing Lau12,13, Yi-Chia Lee14, Ayaka Takasu7,8, Ming Teh15, Mann Yie Thian16, Wai Leong Tam4,17,18,19, Xin Lu20, Sunny H. Wong3, Jimmy B.Y.. So21, Hyunsoo Chung22, Jonathan Lee2,23,24,25, Khay Guan Yeoh2,25, and Patrick Tan1,4,26,27,28; for the Singapore Gastric Cancer Consortium D ow nloaded from http://aacrjournals.org/cancerdiscovery/article-pdf/doi/10.1158/2159-8290.C D -25-0778/3726001/cd-25-0778.pdf by guest on 17 January 2026 AACRJournals.orgOF2 | CANCER DISCOVERY XXX 2026 intRoduction Gastric cancer is the fifth most common malignancy worldwide and the fourth leading cause of cancer death, accounting for 769,000 deaths globally in 2020 (1).

    other:

    Article Title: Single-cell spatiotemporal dissection of the human maternal-fetal interface.
    Article Snippet: Dissected tissues were sequentially washed to remove residual blood cells in DMEM/H-21 medium, supplemented with 12.5% FBS (Hyclone), 1% L-glutamine (Atlanta Biologicals), 1% penicillin/streptomycin and 0.1% gentamicin and cold 1× PBS (Gibco, Thermofisher).



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    Image Search Results


    ( A ) Overview of study design, donor and sample quality and metadata, tissue sampling strategy, and adjacent-section workflows. ( B ) Stereo-seq dataset from an anterior basal ganglia section (donor case ID 2724): left, spatial map with cell-type assignments; right, UMAP embedding resolving 10 major cell classes from the same section. ( C ) MERFISH+ dataset from an adjacent anterior section. Left, spatial map with cell-type assignments; right, UMAP embedding resolving 10 major cell classes corresponding to Stereo-seq in ( B ). ( D–G , progressively greater magnification) Multi-scale Stereo-seq enlarged views of the boxed region in ( B ), illustrating the resolution span from centimeter-scale tissue anatomy to micron-scale detection of individual transcripts, with corresponding cell-type labels ( D, E ), cell-contour segmentation ( F ), and single-cell detail ( G ). ( H–K , progressively greater magnification) Multi-scale MERFISH+ enlarged views of the boxed region in ( C ), showing transcripts for selected genes (DRD1, DRD2, PENK, CCK, SST, CHAT, MBP) (color coded) and other genes (gray coded) that define cell-types at micron-scale resolution. See color keys at ( K ). Scale bars as indicated

    Journal: bioRxiv

    Article Title: Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization

    doi: 10.64898/2025.12.02.691876

    Figure Lengend Snippet: ( A ) Overview of study design, donor and sample quality and metadata, tissue sampling strategy, and adjacent-section workflows. ( B ) Stereo-seq dataset from an anterior basal ganglia section (donor case ID 2724): left, spatial map with cell-type assignments; right, UMAP embedding resolving 10 major cell classes from the same section. ( C ) MERFISH+ dataset from an adjacent anterior section. Left, spatial map with cell-type assignments; right, UMAP embedding resolving 10 major cell classes corresponding to Stereo-seq in ( B ). ( D–G , progressively greater magnification) Multi-scale Stereo-seq enlarged views of the boxed region in ( B ), illustrating the resolution span from centimeter-scale tissue anatomy to micron-scale detection of individual transcripts, with corresponding cell-type labels ( D, E ), cell-contour segmentation ( F ), and single-cell detail ( G ). ( H–K , progressively greater magnification) Multi-scale MERFISH+ enlarged views of the boxed region in ( C ), showing transcripts for selected genes (DRD1, DRD2, PENK, CCK, SST, CHAT, MBP) (color coded) and other genes (gray coded) that define cell-types at micron-scale resolution. See color keys at ( K ). Scale bars as indicated

    Article Snippet: To fit the 2 cm × 3 cm Stereo-seq chips (STOmics/Complete Genomics, 111ST13231-CG), each large brain section was trimmed and/or subdivided within the cryostat to approximately 18 mm × 28 mm dimensions ( ).

    Techniques: Sampling