spatial transcriptomics data (Complete Genomics Inc)

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Complete Genomics Inc spatial transcriptomics data

Single-nucleus transcriptome and spatial <t>transcriptomics</t> landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

Spatial Transcriptomics Data, supplied by Complete Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 472 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/spatial+transcriptomic+data/Stereo-seq+Transcriptomics+Set+for+FFPE/pmc12901460-62-1-11
Average 99 stars, based on 472 article reviews

spatial transcriptomics data - by Bioz Stars, 2026-10

99/100 stars

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1) Product Images from "Single-nucleus and spatial transcriptomics reveal intestinal cellular heterogeneity, differentiation, and cell communication mechanisms in SAP-induced intestinal injury"

Article Title: Single-nucleus and spatial transcriptomics reveal intestinal cellular heterogeneity, differentiation, and cell communication mechanisms in SAP-induced intestinal injury

Journal: Frontiers in Immunology

doi: 10.3389/fimmu.2026.1719902

Single-nucleus transcriptome and spatial transcriptomics landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

Figure Legend Snippet: Single-nucleus transcriptome and spatial transcriptomics landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

Techniques Used: Spatial Transcriptomics, Staining, Marker

Transcriptomics:

Article Title: A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain
Article Snippet: MERSCOPE Cell Boundary Staining Kit , Vizgen , Cat# 10400118. .. Stereo-seq Transcriptomics T kit v1.3 , STOmics , Cat# 211KT13114-CG. .. Stereo-seq 16 Barcode Library Preparation Kit , STOmics , Cat # 111KL160-CG.

Expressing:

Article Title: Functional and Genetic Analyses Unveil the Implication of hoxa4a in Zebrafish Craniofacial Development
Article Snippet: .. Analysis of hoxa4a expression patterns during early zebrafish embryogenesis was conducted using the Spatial Transcript Omics Database (STOmics DB) [20], incorporating both single-cell RNA sequencing (scRNA-seq) and spatial transcriptomic (stereo-seq) datasets. ..

Single Cell:

Article Title: Mapping the zygote-to-adult developmental cell phylogeny in Arabidopsis thaliana reveals a three-cell rule of branching.
Article Snippet: Similar to the evolutionary history of all species on Earth, the developmental lineage history of all cells in a multicellular organism is stored in a phylogenetic tree.. Mapping the zygote-to-adult developmental cell phylogeny of a complex organism is of tremendous value but technically challenging.. We here developed e-SMALT, a powerful cell lineage tracing system integrated with single-cell RNA sequencing, in Arabidopsis thaliana to record the zygote-to-adult developmental lineages of two plant individuals.

RNA Sequencing:

Transformation Assay:

other:

Article Title: RegFormer: a single-cell foundation model powered by gene regulatory hierarchies.
Article Snippet: We acknowledge the Stomics Cloud platform (https://cloud.stomics.tech/) for providing GPU computational resources.

Sequencing:

Article Title: Adult regenerative defects arise from discordant scaling of signal dependent growth and patterning
Article Snippet: .. All subsequent steps, including cryosectioning, Stereo-seq library preparation, sequencing, and raw data processing, were performed at the BGI facility (Riga, Latvia) in collaboration with BGI, supported by a STOmics Grant awarded to E. Tanaka. .. All subsequent steps, including cryosectioning, Stereo-seq library preparation, sequencing, and raw data processing, were performed at the BGI facility (Riga, Latvia) in collaboration with BGI, supported by a STOmics Grant awarded to E. Tanaka.

H&E Stain:

Article Title: Spatial transcriptomic profiling of porcine tissue microarray detecting subclinical circovirus infection
Article Snippet: .. The first section was subjected to H&E staining for histological evaluation, while the second was mounted directly onto a Stereo-seq chip N Slide V1.0 (STOmics, Cat. No. 210CN114). .. Subsequent processing was performed according to the Stereo-seq Transcriptomics Set for FFPE User Manual (Document No. STUM-TT004) using the Stereo-seq Transcriptomics N Kit V1.0 (Cat. No. 211KN114) and Stereo-seq 16 Barcode Library Preparation Kit V1.0 (Cat. No. 111KL160).

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