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Human Protein Atlas single-cell transcriptome database
Single Cell Transcriptome Database, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/single+cell+transcriptome+databases/single+cell+transcriptomic+data/pmc08764212-155-6-11
Average 90 stars, based on 1 article reviews
single-cell transcriptome database - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Expressing:

Article Title: Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline.
Article Snippet: .. Heatmap shows expression levels of genes encoding candidate proteins (cognate genes) across 76 available cell types based on single cell transcriptomics data sourced from the Human Protein Atlas. ..

Article Title: Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline.
Article Snippet: .. Heatmap shows expression levels of genes encoding candidate proteins (cognate genes) across CNS cell types based on single cell transcriptomics data sourced from the Human Protein Atlas. ..

Article Title: Adipocyte CLDN5 promotes thermogenesis and energy expenditure through regulation of IL10 expression.
Article Snippet: .. CLDN5 is selectively enriched in non-thermogenic adipocytes Both the human protein atlas (HPA) transcriptomic datasets and the single cell type transcriptomics map of human tissues clearly revealed that CLDN5 displayed high expression level in fat tissue and in adipocytes (Fig. 1a and Supplementary Fig. 1a)21,22. ..

Single-cell Transcriptomics:

Article Title: Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline.
Article Snippet: .. Heatmap shows expression levels of genes encoding candidate proteins (cognate genes) across 76 available cell types based on single cell transcriptomics data sourced from the Human Protein Atlas. ..

Article Title: Proteomics identifies potential immunological drivers of postinfection brain atrophy and cognitive decline.
Article Snippet: .. Heatmap shows expression levels of genes encoding candidate proteins (cognate genes) across CNS cell types based on single cell transcriptomics data sourced from the Human Protein Atlas. ..

other:

Article Title: Single-cell sequencing analysis reveals the essential role of the m 6 A reader YTHDF1 in retinal visual function by regulating TULP1 and DHX38 translation.
Article Snippet: To investigate the potential function of YTHDF1 in the human retina, publicly available single-cell transcriptomic data from the Human Protein Atlas (HPA) database (https://www.proteinatlas.org) were analyzed to assess the expression levels of YTHDF1 in human retinal cells.

Article Title: Exploring antidiabetic drug targets as potential disease-modifying agents in osteoarthritis.
Article Snippet: Department of Orthopedic Surgery, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China Kolling Institute, Sydney Musculoskeletal Health, The University of Sydney, Sydney, Australia Research Center of Clinical Epidemiology, Peking University Third Hospital, Beijing, China Centre for Big Data Research in Health, University of New South Wales, Sydney, Australia Clinical Research Centre, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong, China Shanghai Institute of Microsurgery on Extremities, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China Department of Physical Medicine and Rehabilitation, Mandalay General Hospital, University of Medicine Mandalay, Mandalay, Myanmar Department of Internal Medicine, Erasmus MC, Medical Center, Rotterdam, the Netherlands Division of Rheumatology, Allergy, and Immunology, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, USA The Mongan Institute, Massachusetts General Hospital, Harvard Medical School, Boston, USA

Single Cell:

Article Title: Isoliquiritigenin alleviates SLC7A11-mediated efferocytosis inhibition to promote wounds healing in diabetes.
Article Snippet: Finally, all data analysis results, including network diagrams and pathway enrichment analysis charts, were visualized using the R Studio software to clearly present our research findings. .. The single-cell transcriptomic data for human skin originates from the Human Protein Atlas, a Swedish-based program that provides detailed tissue-specific gene expression information. ..

Article Title: Adipocyte CLDN5 promotes thermogenesis and energy expenditure through regulation of IL10 expression.
Article Snippet: .. CLDN5 is selectively enriched in non-thermogenic adipocytes Both the human protein atlas (HPA) transcriptomic datasets and the single cell type transcriptomics map of human tissues clearly revealed that CLDN5 displayed high expression level in fat tissue and in adipocytes (Fig. 1a and Supplementary Fig. 1a)21,22. ..

Gene Expression:

Article Title: Isoliquiritigenin alleviates SLC7A11-mediated efferocytosis inhibition to promote wounds healing in diabetes.
Article Snippet: Finally, all data analysis results, including network diagrams and pathway enrichment analysis charts, were visualized using the R Studio software to clearly present our research findings. .. The single-cell transcriptomic data for human skin originates from the Human Protein Atlas, a Swedish-based program that provides detailed tissue-specific gene expression information. ..

Transcriptomics:

Article Title: Adipocyte CLDN5 promotes thermogenesis and energy expenditure through regulation of IL10 expression.
Article Snippet: .. CLDN5 is selectively enriched in non-thermogenic adipocytes Both the human protein atlas (HPA) transcriptomic datasets and the single cell type transcriptomics map of human tissues clearly revealed that CLDN5 displayed high expression level in fat tissue and in adipocytes (Fig. 1a and Supplementary Fig. 1a)21,22. ..

Biomarker Discovery:

Article Title: Unlocking liver physiology: comprehensive pathway maps for mechanistic understanding
Article Snippet: .. For cell type validation of specific isoforms of proteins, we used a single cell transcriptomic consensus dataset from the Human Protein Atlas - proteinatlas.org ( ) (downloaded from https://www.proteinatlas.org/download/tsv/normal_ihc_cell_types.tsv.zip ) to curate pathways relevant to a specific cell-type. ..



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Expression of genes associated with SARS-CoV-2 entry in single-cell <t>transcriptome</t> sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.
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Image Search Results


Expression of genes associated with SARS-CoV-2 entry in single-cell transcriptome sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

Journal: Kidney Diseases

Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

doi: 10.1159/000508162

Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in single-cell transcriptome sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

Techniques: Expressing, Sequencing, Marker, Quantitative Proteomics

Expression of genes associated with SARS-CoV-2 entry in single-nuclear transcriptome. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells. c Violin plot showing ACE2, SLC6A19, and TMPRSS2 expression distribution among different cell clusters.

Journal: Kidney Diseases

Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

doi: 10.1159/000508162

Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in single-nuclear transcriptome. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells. c Violin plot showing ACE2, SLC6A19, and TMPRSS2 expression distribution among different cell clusters.

Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

Techniques: Expressing, Marker, Quantitative Proteomics

Expression of genes associated with SARS-CoV-2 entry in a single-cell transcriptome sequencing database of Asians. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

Journal: Kidney Diseases

Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

doi: 10.1159/000508162

Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in a single-cell transcriptome sequencing database of Asians. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

Techniques: Expressing, Sequencing, Marker, Quantitative Proteomics