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single-cell transcriptomics database  (Human Protein Atlas)

 
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    Human Protein Atlas single-cell transcriptomics database
    Single Cell Transcriptomics Database, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/single+cell+transcriptome+databases/rna+sequencing+database+of+cell+lines/pm35895896-155-4-1
    Average 90 stars, based on 1 article reviews
    single-cell transcriptomics database - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: TRMT6 promotes hepatocellular carcinoma progression through the PI3K/AKT signaling pathway.
    Article Snippet: The Human Protein Atlas (HPA) online database (https:// www. prote inatl as. org/ ENSG0 00000 89195- TRMT6/ patho logy/ liver+ cancer), a comprehensive human proteomics portal, was used to perform TRMT6-related survival analysis.

    Article Title: Nidogen-1 could play a role in diabetic kidney disease development in type 2 diabetes: a genome-wide association meta-analysis.
    Article Snippet: We queried the Human Protein Atlas single-cell RNA expression database (https:// www. prote inatl as. org/ ENSG0 00001 16962- NID1/ single+ cell+ type) for NID1 tissue enrichment.

    Article Title: Proteomic and phosphoproteomic landscapes of acute myeloid leukemia.
    Article Snippet: The Human Protein Atlas single-cell transcriptomics database43 showed expression primarily on macrophages and hepatic stellate cells.

    Expressing:

    Article Title: Synergistic Anticancer Activity of HSP70 Inhibitor and Doxorubicin in Gain-of-Function Mutated p53 Breast Cancer Cells.
    Article Snippet: .. The expression patterns of BAG2 and LOXL1 in different breast cancer cell lines. (A) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG0 0000112208-BAG2/cell+line [accessed on 1 March 2024]), the nTPM of BAG2 is 21.5 in MDA-MB-231 cells, but the nTPM of T47D is only 1.9. (B) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG00000129038-LOXL1/cell+line [accessed on 1 March 2024]), the nTPM of LOXL1 is 5.5 in MDA-MB-231 cells, but the nTPM of T47D is only 0.5. ..

    RNA Sequencing:

    Article Title: Synergistic Anticancer Activity of HSP70 Inhibitor and Doxorubicin in Gain-of-Function Mutated p53 Breast Cancer Cells.
    Article Snippet: .. The expression patterns of BAG2 and LOXL1 in different breast cancer cell lines. (A) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG0 0000112208-BAG2/cell+line [accessed on 1 March 2024]), the nTPM of BAG2 is 21.5 in MDA-MB-231 cells, but the nTPM of T47D is only 1.9. (B) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG00000129038-LOXL1/cell+line [accessed on 1 March 2024]), the nTPM of LOXL1 is 5.5 in MDA-MB-231 cells, but the nTPM of T47D is only 0.5. ..

    Article Title: Synergistic Anticancer Activity of HSP70 Inhibitor and Doxorubicin in Gain-of-Function Mutated p53 Breast Cancer Cells
    Article Snippet: .. According to the RNA sequencing database of cell lines in the Human Protein Atlas ( https://www.proteinatlas.org/ENSG00000073282-TP63/cell+line [accessed on 1 March 2024]), the average value of nTPM of p63 in thirty-eight different head and neck cancer cell lines is 125.5. ..

    Article Title: Synergistic Anticancer Activity of HSP70 Inhibitor and Doxorubicin in Gain-of-Function Mutated p53 Breast Cancer Cells.
    Article Snippet: .. According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG00000073282-TP63/cell+line [accessed on 1 March 2024]), the average value of nTPM of p63 in thirty-eight different head and neck cancer cell lines is 125.5. ..

    Multiple Displacement Amplification:

    Article Title: Synergistic Anticancer Activity of HSP70 Inhibitor and Doxorubicin in Gain-of-Function Mutated p53 Breast Cancer Cells.
    Article Snippet: .. The expression patterns of BAG2 and LOXL1 in different breast cancer cell lines. (A) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG0 0000112208-BAG2/cell+line [accessed on 1 March 2024]), the nTPM of BAG2 is 21.5 in MDA-MB-231 cells, but the nTPM of T47D is only 1.9. (B) According to the RNA sequencing database of cell lines in the Human Protein Atlas (https://www.proteinatlas.org/ENSG00000129038-LOXL1/cell+line [accessed on 1 March 2024]), the nTPM of LOXL1 is 5.5 in MDA-MB-231 cells, but the nTPM of T47D is only 0.5. ..



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    Expression of genes associated with SARS-CoV-2 entry in single-cell <t>transcriptome</t> sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.
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    Image Search Results


    Expression of genes associated with SARS-CoV-2 entry in single-cell transcriptome sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

    Journal: Kidney Diseases

    Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

    doi: 10.1159/000508162

    Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in single-cell transcriptome sequencing database. a UMAP visualization displaying major cell clusters (22,268 single cells). b Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing a cell type, and color intensity binned count-based expression level amongst expressing cells. c UMAP projection, points colored by detection of ACE2 (left), TMPRSS2 (middle), and SLC6A19 (right). Blue, RNA positive; gray, RNA negative. d Volcano plot displaying differential expression of genes between ACE2+ and ACE2– PT cells. Red, up-regulated genes; blue, down-regulated genes. e Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

    Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

    Techniques: Expressing, Sequencing, Marker, Quantitative Proteomics

    Expression of genes associated with SARS-CoV-2 entry in single-nuclear transcriptome. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells. c Violin plot showing ACE2, SLC6A19, and TMPRSS2 expression distribution among different cell clusters.

    Journal: Kidney Diseases

    Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

    doi: 10.1159/000508162

    Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in single-nuclear transcriptome. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells. c Violin plot showing ACE2, SLC6A19, and TMPRSS2 expression distribution among different cell clusters.

    Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

    Techniques: Expressing, Marker, Quantitative Proteomics

    Expression of genes associated with SARS-CoV-2 entry in a single-cell transcriptome sequencing database of Asians. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

    Journal: Kidney Diseases

    Article Title: Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis

    doi: 10.1159/000508162

    Figure Lengend Snippet: Expression of genes associated with SARS-CoV-2 entry in a single-cell transcriptome sequencing database of Asians. a Dot plot of LRP2 and CUBN (marker genes of PT cells), ACE2, TMPRSS2, and SLC6A19; dot size represents the fraction of cells expressing each cell type, and color intensity binned count-based expression level amongst expressing cells. b Bar plot presenting significantly enriched GO terms obtained from GO enrichment analysis performed with differential expression of genes between ACE2+ and ACE2– PT cells.

    Article Snippet: In the latest human kidney single-cell transcriptome database (scRNA-seq) from the Broad Institute and the University of Michigan [ ], we found significant expression of ACE2 in PT cells, glomerular parietal epithelial cells, and descending thin limb cells (Fig. ; online suppl.

    Techniques: Expressing, Sequencing, Marker, Quantitative Proteomics