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sequest ht algorithm  (Thermo Fisher)


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    Thermo Fisher sequest ht algorithm
    Sequest Ht Algorithm, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequest-ht+algorithm/pmc11753361-461-18-21
    Average 90 stars, based on 1 article reviews
    sequest ht algorithm - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title:
    Article Snippet: Proteins were identified using the SEQUEST HT algorithm integrated in Proteome Discoverer 2.1 (Thermo Scientific).

    Article Title: NEK9 regulates primary cilia formation by acting as a selective autophagy adaptor for MYH9/myosin IIA.
    Article Snippet: The obtained raw data were subjected to database search (UniProt, reviewed mouse database as of September 13th, 2018) with Sequest HT algorithm running on Proteome Discoverer 2.2 (Thermo Fisher Scientific).

    Article Title: Membrane structure-responsive lipid scrambling by TMEM63B to control plasma membrane lipid distribution
    Article Snippet: The MS/MS spectra were used to search the SwissProt database with decoy sequences to identify proteins using the Sequest HT algorithm (Thermo Fisher Scientific).

    Article Title: Resolving Phenotypic Variability in Mitochondrial Diseases: Preliminary Findings of a Proteomic Approach.
    Article Snippet: The bottom-up MS/MS data were elaborated using Proteome Discoverer 2.4.1.15 (Thermo Fisher Scientific) based on the SEQUEST HT algorithm (University of Washington, USA, licensed to Thermo Electron Corp., San Jose, CA, USA) against UniProtKB/SwissProt homo sapiens proteome database.

    Article Title: Resolving Phenotypic Variability in Mitochondrial Diseases: Preliminary Findings of a Proteomic Approach
    Article Snippet: The bottom-up MS/MS data were elaborated using Proteome Discoverer 2.4.1.15 (Thermo Fisher Scientific) based on the SEQUEST HT algorithm (University of Washington, USA, licensed to Thermo Electron Corp., San Jose, CA, USA) against UniProtKB/Swiss-Prot homo sapiens proteome database.

    Tandem Mass Spectroscopy:

    Article Title: Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars
    Article Snippet: .. The resulting MS/MS spectra acquired from the Q Exactive MS were searched against the B. coagulans B-768 proteome database appended with common protein contaminants using the SEQUEST HT algorithm in Proteome Discoverer v.2.5 (Thermo Scientific) and peptide spectrum matches (PSMs) scored and filtered with Percolator [settings and dynamic/static mods described in Walker et al.’s study ( )]. ..



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    Image Search Results


    Journal: iScience

    Article Title: Bromodomain protein BRD8 regulates cell cycle progression in colorectal cancer cells through a TIP60-independent regulation of the pre-RC complex

    doi: 10.1016/j.isci.2023.106563

    Figure Lengend Snippet:

    Article Snippet: Peptide identification was performed using SEQUEST HT algorithm in Proteome Discoverer Software (v2.5) (Thermo Fisher Scientific) based on the statistical criterion of a false discovery rate <1%.

    Techniques: Recombinant, Plasmid Preparation, Cell Cycle Assay, CCK-8 Assay, Flow Cytometry, Viability Assay, Ubiquitin Proteomics, Expressing, Cloning, Mutagenesis, Software