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colorectal tissue single cell rna sequencing scrna seq data  (Broad Clinical Labs)


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    Structured Review

    Broad Clinical Labs colorectal tissue single cell rna sequencing scrna seq data
    Colorectal Tissue Single Cell Rna Sequencing Scrna Seq Data, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 779 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sequence+data/RNA+Sequencing/pm41603279-78-0-16
    Average 96 stars, based on 779 article reviews
    colorectal tissue single cell rna sequencing scrna seq data - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    Expressing:

    Article Title: Cross-Cancer Characterization of CAMK2A Reveals Its Favorable Prognostic Association and Neuronal Signature Enrichment in Glioma
    Article Snippet: .. CAMK2A expression at the single-cell level was examined using a publicly available single-nucleus RNA-sequencing dataset from the Broad Institute Single Cell Portal (https://singlecell.broadinstitute.org/single_cell, accessed on 11 April 2026) [73]. ..

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..

    Single Cell:

    Article Title: Cross-Cancer Characterization of CAMK2A Reveals Its Favorable Prognostic Association and Neuronal Signature Enrichment in Glioma
    Article Snippet: .. CAMK2A expression at the single-cell level was examined using a publicly available single-nucleus RNA-sequencing dataset from the Broad Institute Single Cell Portal (https://singlecell.broadinstitute.org/single_cell, accessed on 11 April 2026) [73]. ..

    Article Title: A core transcriptional regulatory circuitry controls super-enhancer-driven activation of LGR5 in colorectal cancer.
    Article Snippet: .. B t-SNE visualization ofMYC and LGR5 in normal colon (red) and CRC (blue) cells.A,B The singlecell RNA sequencing results were obtained from the Human Colon Cancer Atlas in the Single Cell Portal (https://singlecell.broadinstitute.org/single_cell, GSE17834139).C Scatter plots showing the correlation of LGR5 level with the level of core circuitry factors (MYC, ETS2, FOXP1) in primary CRCs (n = 460; TCGA cohort). ..

    Article Title: GATA3 and YBX1 are associated with ER-specific metabolic programs and vulnerabilities in breast cancer
    Article Snippet: .. Single-cell RNA-sequencing data were obtained from the Single Cell Portal hosted by the Broad Institute (https://singlecell. ..

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..

    Article Title: Gpnmb defines a phagocytic state of microglia linked to cell death in prion disease mouse model.
    Article Snippet: .. The single-cell RNA-seq dataset reanalyzed in this study (26) is available from the Broad Institute Single Cell Portal under study SCP1962. ..

    Article Title: Effect of chemoradiation treatment on methylated BCAT1 and IKZF1 in rectal cancer.
    Article Snippet: Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia South Australian Immunogenomics Cancer Institute, The University of Adelaide, Adelaide, South Australia, Australia Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, South Australia, Australia Department of Medical Oncology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia Department of Gastroenterology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia

    RNA Sequencing:

    Article Title: A core transcriptional regulatory circuitry controls super-enhancer-driven activation of LGR5 in colorectal cancer.
    Article Snippet: .. B t-SNE visualization ofMYC and LGR5 in normal colon (red) and CRC (blue) cells.A,B The singlecell RNA sequencing results were obtained from the Human Colon Cancer Atlas in the Single Cell Portal (https://singlecell.broadinstitute.org/single_cell, GSE17834139).C Scatter plots showing the correlation of LGR5 level with the level of core circuitry factors (MYC, ETS2, FOXP1) in primary CRCs (n = 460; TCGA cohort). ..

    Article Title: IFN-γ signaling drives multiple immunosuppressive pathways and poor clinical outcome in glioblastoma
    Article Snippet: .. In silico data analysis RNA sequencing data from patients with GBM were obtained from The Cancer Genome Atlas (TCGA) Firehose Legacy dataset, published by the Broad Institute (54-57). ..

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..

    Article Title: Gpnmb defines a phagocytic state of microglia linked to cell death in prion disease mouse model.
    Article Snippet: .. The single-cell RNA-seq dataset reanalyzed in this study (26) is available from the Broad Institute Single Cell Portal under study SCP1962. ..

    In Silico:

    Article Title: IFN-γ signaling drives multiple immunosuppressive pathways and poor clinical outcome in glioblastoma
    Article Snippet: .. In silico data analysis RNA sequencing data from patients with GBM were obtained from The Cancer Genome Atlas (TCGA) Firehose Legacy dataset, published by the Broad Institute (54-57). ..

    Analysis:

    Article Title: IFN-γ signaling drives multiple immunosuppressive pathways and poor clinical outcome in glioblastoma
    Article Snippet: .. In silico data analysis RNA sequencing data from patients with GBM were obtained from The Cancer Genome Atlas (TCGA) Firehose Legacy dataset, published by the Broad Institute (54-57). ..

    other:

    Article Title: Multi-omic re-analysis increases diagnostic yield in individuals with Cornelia de Lange syndrome
    Article Snippet: RNA sequencing was performed at the BROAD institute at a minimum depth of 100M reads per sample and DRAGEN v3.9 RNA-seq workflow was used to align the raw reads to the human transcriptome and estimate the abundance of transcripts defined in GENCODE V39.

    Tissue:

    Article Title: Effect of chemoradiation treatment on methylated BCAT1 and IKZF1 in rectal cancer.
    Article Snippet: Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia South Australian Immunogenomics Cancer Institute, The University of Adelaide, Adelaide, South Australia, Australia Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, South Australia, Australia Department of Medical Oncology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia Department of Gastroenterology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia

    Gene Expression:

    Article Title: Effect of chemoradiation treatment on methylated BCAT1 and IKZF1 in rectal cancer.
    Article Snippet: Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Adelaide, South Australia, Australia South Australian Immunogenomics Cancer Institute, The University of Adelaide, Adelaide, South Australia, Australia Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, South Australia, Australia Department of Medical Oncology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia Department of Gastroenterology, Flinders Medical Centre, Southern Adelaide Local Health Network, Adelaide, South Australia, Australia



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