Review



software ridom seqsphere  (Ridom GmbH)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Ridom GmbH software ridom seqsphere
    Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/ridom+seqsphere/pm40662699-81-13-15
    Average 90 stars, based on 1 article reviews
    software ridom seqsphere - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    other:

    Article Title: Characterization of vanA-harboring plasmids supports differentiation of outbreak-related and sporadic vancomycin-resistant Enterococcus faecium isolates in a tertiary care hospital.
    Article Snippet: MLST STs were identified using the scheme for E. faecium [13] implemented in Ridom SeqSphere+ (Ridom GmbH).

    Article Title: Localization of AbaR4-type genomic islands and multidrug resistance plasmids in multiple Acinetobacter baumannii clones and Acinetobacter pittii from infections of dogs and cats.
    Article Snippet: STs, ARGs, and virulence genes were detected using Ridom Seqsphere+ v9.0 based on Pasteur’s MLST scheme (STPas), the NCBI AMRFinderPlus v3.11, and the Virulence Factor Database (VFDB), respectively (Diancourt et al., 2010; Feldgarden et al., 2019; Liu et al., 2018).

    Article Title: Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens
    Article Snippet: However, except for the WGSBAC pipeline and the Ridom SeqSphere+ pipeline for L. monocytogenes and E. coli , which provided a partitions table, the vast majority of them do not produce this type of output, but instead end up with outputs such as allele/SNP or distance matrices and phylogenetic trees (Table ).

    Sequencing:

    Article Title: Emergence of NDM-1- and OXA-23-Co-Producing Acinetobacter baumannii ST1 Isolates from a Burn Unit in Spain.
    Article Snippet: .. Phylogenetic analysis was performed using Ridom SeqSphere+ (cgMLST), while sequence typing was performed using ARIBA (Pasteur and Oxford schemes). ..

    Article Title: Evaluation of three commercial rapid immunoassays for the diagnosis of Clostridioides difficile infection.
    Article Snippet: DNA extraction and sequencing using Illumina MiSeq (Illumina, San Diego, CA, United States) were performed as previously described by Werner et al (19). .. Multi-locus sequence typing (MLST) and core-genome MLST (cgMLST) were performed using the software Ridom SeqSphere+ (Ridom GmbH, Münster, Germany) and 1928D (1928 Diagnostics, Gothenburg, Sweden). .. To compare the tcdC gene sequences of the study strains, the software BioEdit sequence alignment editor (Tom Hall, USA) was used to align the sequences to a wild-type tcdC sequence from reference strain ATCC 43255.

    Article Title: Klebsiella aerogenes ST117 causing folliculitis in men having sex with men, Belgium, February 2025
    Article Snippet: The de novo assembly was performed using the Velvet algorithm (version 1.1.04) on Ridom SeqSphere + version 10.0.5 (Ridom GmbH, Münster, Germany). .. The K. aerogenes multilocus sequence type (MLST) was determined using Ridom SeqSphere. ..

    Software:

    Article Title: Evaluation of three commercial rapid immunoassays for the diagnosis of Clostridioides difficile infection.
    Article Snippet: DNA extraction and sequencing using Illumina MiSeq (Illumina, San Diego, CA, United States) were performed as previously described by Werner et al (19). .. Multi-locus sequence typing (MLST) and core-genome MLST (cgMLST) were performed using the software Ridom SeqSphere+ (Ridom GmbH, Münster, Germany) and 1928D (1928 Diagnostics, Gothenburg, Sweden). .. To compare the tcdC gene sequences of the study strains, the software BioEdit sequence alignment editor (Tom Hall, USA) was used to align the sequences to a wild-type tcdC sequence from reference strain ATCC 43255.



    Similar Products

    seqsphere+ software  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pmc12278488-119-12-15
    Average 90 stars, based on 1 article reviews
    seqsphere+ software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    software ridom seqsphere  (Ridom GmbH)
    90
    Ridom GmbH software ridom seqsphere
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Software Ridom Seqsphere, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/ridom+seqsphere/pm40662699-81-13-15
    Average 90 stars, based on 1 article reviews
    software ridom seqsphere - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere + software v 7.7.2  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + software v 7.7.2
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + Software V 7.7.2, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pm40598567-87-7-12
    Average 90 stars, based on 1 article reviews
    seqsphere + software v 7.7.2 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    target definer tool in ridom seqsphere+ software  (Ridom GmbH)
    90
    Ridom GmbH target definer tool in ridom seqsphere+ software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Target Definer Tool In Ridom Seqsphere+ Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere++target+definer+tool/pm40633272-114-13-13
    Average 90 stars, based on 1 article reviews
    target definer tool in ridom seqsphere+ software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    target definer tool within ridom seqsphere+ software version 8  (Ridom GmbH)
    90
    Ridom GmbH target definer tool within ridom seqsphere+ software version 8
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Target Definer Tool Within Ridom Seqsphere+ Software Version 8, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/target+definer+tool+within+ridom+seqsphere++software+version+8/pm40570713-94-23-27
    Average 90 stars, based on 1 article reviews
    target definer tool within ridom seqsphere+ software version 8 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8  (Ridom GmbH)
    90
    Ridom GmbH cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Cgmlst Based Minimum Spanning Tree (Mst) Constructed Using Ridom Seqsphere+ Software Version 8, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/cgmlst+scheme+ridom+seqsphere/pm40570713-98-9-17
    Average 90 stars, based on 1 article reviews
    cgmlst-based minimum spanning tree (mst) constructed using ridom seqsphere+ software version 8 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere+ software version 10.0.5  (Ridom GmbH)
    90
    Ridom GmbH seqsphere+ software version 10.0.5
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere+ Software Version 10.0.5, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/pm40532976-111-0-7
    Average 90 stars, based on 1 article reviews
    seqsphere+ software version 10.0.5 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    seqsphere + software  (Ridom GmbH)
    90
    Ridom GmbH seqsphere + software
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Seqsphere + Software, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/seqsphere/10__2807_slash_1560___7917__es__2025__30__23__2400590-79-13-13
    Average 90 stars, based on 1 article reviews
    seqsphere + software - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier
    velvet algorithm integrated into the ridom seqsphere + software version 7  (Ridom GmbH)
    90
    Ridom GmbH velvet algorithm integrated into the ridom seqsphere + software version 7
    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom <t>Seqsphere</t> + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site
    Velvet Algorithm Integrated Into The Ridom Seqsphere + Software Version 7, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqsphere++software/velvet+algorithm+integrated+into+the+ridom+seqsphere+++software+version+7/pmc12164281-59-10-15
    Average 90 stars, based on 1 article reviews
    velvet algorithm integrated into the ridom seqsphere + software version 7 - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Journal: BMC Microbiology

    Article Title: Multi-host distribution of Rhodococcus equi (Prescottella equi) strains and their phylogenomic clustering

    doi: 10.1186/s12866-025-04152-8

    Figure Lengend Snippet: Population structure of the global Rhodococcus equi dataset including 233 genomes from 18 countries. Tree constructed using ad hoc core-genome MLST (cgMLST) scheme containing 2’737 genes generated in Ridom Seqsphere + v9.0.1 ( https://www.ridom.de/seqsphere/cgmlst/ ) and converted to a neighbor-joining phylogeny using the R package ape . The cgMLST phylogeny was rooted at the mid-point and visualized using iTOL . The year and country of isolation are shown in the inner and second ring from the centre respectively. Source attribution of the different isolates is shown in the third ring. Presence/absence of the virulence-associated plasmid and the various plasmid categories are color-coded in the outer ring. The scale bar expresses the average number of nucleotide substitutions per site

    Article Snippet: Core-genome MLST (cgMLST) analysis for 286 R. equi genomes was performed in Ridom Seqsphere+ (v9.0.1; Ridom GmbH, Münster, Germany).

    Techniques: Construct, Generated, Isolation, Plasmid Preparation