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BioResource International Inc sanger sequencing data
Sanger Sequencing Data, supplied by BioResource International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sanger+sequence+data/sanger+sequencing/pm40412790-116-16-23
Average 90 stars, based on 1 article reviews
sanger sequencing data - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

Sequencing:

Article Title: The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.
Article Snippet: .. Samples were submitted to the Barbara Davis Center Bioresource Core for Sanger sequencing. ..

Article Title: Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair
Article Snippet: .. The DNA sequence of the open reading frames (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). ..

Article Title: Visualizing sphingomyelin in the retina.
Article Snippet: 33 Sphingomyelin (SM) is a major component of cellular membranes that is altered by retinal and optic nerve 34 degenerations.. However, our understanding of the influence of SM during degenerations is hampered by 35 methodological limitations.. Prior investigations have demonstrated the accumulation of SM to plasma 36 membranes of cultured cells, using an enhanced green fluorescent non-toxic truncated form of lysenin (EGFP37 NT-Lys), which is a protein that specifically binds to SM.

Article Title: Experimental exchange of paralogous domains in the MLH family provides evidence of sub-functionalization after gene duplication
Article Snippet: .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center).

Article Title: Subtype analysis and prevalence of mixed subtype infection of Blastocystis in farmed pigs from Chiba Prefecture, Japan.
Article Snippet: Blastocystis is an intestinal eukaryote found globally in humans and a wide range of animals.. Blastocystis has been reported in domestic pigs, with subtype (ST) 5 being the most dominant, followed by ST1 and ST3.. PCRsequencing is commonly used for ST identification in pigs, but it often results in an underestimation of the prevalence of mixed infections.

Article Title: Granulomatous mural folliculitis in 16 domestic goats: Infection with malignant catarrhal fever viruses and colocalization with ovine herpesvirus-2 using in situ hybridization.
Article Snippet: Granulomatous mural folliculitis (GMF) is an uncommon reaction pattern occasionally observed in nonadapted ruminant hosts infected with malignant catarrhal fever viruses.. This report characterizes GMF and concurrent cutaneous lesions in 16 goats with crusting dermatitis using histochemistry including hematoxylin and eosin, periodic acid–Schiff, and Grocott’s methenamine silver, and immunohistochemistry for CD3, CD20, ionized calcium binding adaptor molecule 1, and cytokeratin AE1/3.. Infiltrates in all 16 GMF cases consisted of macrophages and fewer T lymphocytes, and variably included eosinophils, multinucleated histiocytic giant cells, and/or neutrophils.

DNA Sequencing:

Article Title: Self-Cleavage of Human Chloride Channel Accessory 2 Causes a Conformational Shift That Depends on Membrane Anchorage and Is Required for Its Regulation of Store-Operated Calcium Entry.
Article Snippet: .. Sanger DNA sequencing to confirm constructions was conducted by Sigma-Aldrich, Inc., or the Cornell Bioresource Center. .. Primers were synthesized by Integrated DNA Technologies.

Article Title: Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair
Article Snippet: .. The DNA sequence of the open reading frames (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). ..

Article Title: Experimental exchange of paralogous domains in the MLH family provides evidence of sub-functionalization after gene duplication
Article Snippet: .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center).

Construct:

Article Title: Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair
Article Snippet: .. The DNA sequence of the open reading frames (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). ..

Article Title: Experimental exchange of paralogous domains in the MLH family provides evidence of sub-functionalization after gene duplication
Article Snippet: .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center). .. The DNA sequence of the open reading frame (including 300 bp upstream and 150 bp downstream) of constructs was confirmed by Sanger DNA sequencing (Cornell BioResource Center).

other:

Article Title: Novel Peptide from Commensal Staphylococcus simulans Blocks Methicillin-Resistant Staphylococcus aureus Quorum Sensing and Protects Host Skin from Damage
Article Snippet: Samples were submitted to the Barbara Davis Center 443 Bioresource Core for Sanger sequencing.

Infection:

Article Title: Subtype analysis and prevalence of mixed subtype infection of Blastocystis in farmed pigs from Chiba Prefecture, Japan.
Article Snippet: Blastocystis is an intestinal eukaryote found globally in humans and a wide range of animals.. Blastocystis has been reported in domestic pigs, with subtype (ST) 5 being the most dominant, followed by ST1 and ST3.. PCRsequencing is commonly used for ST identification in pigs, but it often results in an underestimation of the prevalence of mixed infections.

Polymerase Chain Reaction:

Article Title: Granulomatous mural folliculitis in 16 domestic goats: Infection with malignant catarrhal fever viruses and colocalization with ovine herpesvirus-2 using in situ hybridization.
Article Snippet: Granulomatous mural folliculitis (GMF) is an uncommon reaction pattern occasionally observed in nonadapted ruminant hosts infected with malignant catarrhal fever viruses.. This report characterizes GMF and concurrent cutaneous lesions in 16 goats with crusting dermatitis using histochemistry including hematoxylin and eosin, periodic acid–Schiff, and Grocott’s methenamine silver, and immunohistochemistry for CD3, CD20, ionized calcium binding adaptor molecule 1, and cytokeratin AE1/3.. Infiltrates in all 16 GMF cases consisted of macrophages and fewer T lymphocytes, and variably included eosinophils, multinucleated histiocytic giant cells, and/or neutrophils.

Purification:

Article Title: Granulomatous mural folliculitis in 16 domestic goats: Infection with malignant catarrhal fever viruses and colocalization with ovine herpesvirus-2 using in situ hybridization.
Article Snippet: Granulomatous mural folliculitis (GMF) is an uncommon reaction pattern occasionally observed in nonadapted ruminant hosts infected with malignant catarrhal fever viruses.. This report characterizes GMF and concurrent cutaneous lesions in 16 goats with crusting dermatitis using histochemistry including hematoxylin and eosin, periodic acid–Schiff, and Grocott’s methenamine silver, and immunohistochemistry for CD3, CD20, ionized calcium binding adaptor molecule 1, and cytokeratin AE1/3.. Infiltrates in all 16 GMF cases consisted of macrophages and fewer T lymphocytes, and variably included eosinophils, multinucleated histiocytic giant cells, and/or neutrophils.



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Image Search Results


Characteristics of specimens and success of whole genome sequencing. (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.

Journal: Frontiers in Microbiology

Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

doi: 10.3389/fmicb.2024.1475144

Figure Lengend Snippet: Characteristics of specimens and success of whole genome sequencing. (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.

Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

Techniques: Sequencing, Generated, Illumina Sequencing

Epidemiological curve of confirmed measles cases, 2018–2020, by genotype and sequencing coverage. Top panel: all confirmed cases ( n = 143). Middle panel: cases occurring in 2018 ( n = 29). Bottom panel: cases occurring in 2019 ( n = 113). All panels: blue-fill: genotype D8; yellow-fill: genotype B3; no fill: case without sequences. Bottom two panels: solid-fill: N-450, MF-NCR and WGS-t sequences obtained; diagonal pattern: N-450 and MF-NCR sequences obtained; horizontal pattern: N-450 sequence only. Letter indicates outbreak identifier; lack of a letter indicates isolated case. Check mark (√): case was imported. Asterisk (*): case with unknown source.

Journal: Frontiers in Microbiology

Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

doi: 10.3389/fmicb.2024.1475144

Figure Lengend Snippet: Epidemiological curve of confirmed measles cases, 2018–2020, by genotype and sequencing coverage. Top panel: all confirmed cases ( n = 143). Middle panel: cases occurring in 2018 ( n = 29). Bottom panel: cases occurring in 2019 ( n = 113). All panels: blue-fill: genotype D8; yellow-fill: genotype B3; no fill: case without sequences. Bottom two panels: solid-fill: N-450, MF-NCR and WGS-t sequences obtained; diagonal pattern: N-450 and MF-NCR sequences obtained; horizontal pattern: N-450 sequence only. Letter indicates outbreak identifier; lack of a letter indicates isolated case. Check mark (√): case was imported. Asterisk (*): case with unknown source.

Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

Techniques: Sequencing, Isolation

Phylogenetic analysis of measles genotype B3 strains detected in Canada, 2018–2020. (A,B) Maximum likelihood phylogenetic trees of the N450, 450 nucleotides, [(A) 27 sequences] and MF-NCR, 1018 nucleotides, [(B) 21 sequences] loci with 1,000 bootstrap replicates. Bold face indicates the genotype B3 reference sequence [N450 only (A)]. Italics are international sequences obtained from GenBank and for the N450 tree (A) represent WHO-named strains. Thick branch edges correspond to bootstrap values ≥0.7. (D) Maximum clade credibility phylogenetic tree of WGS-t sequences ( n = 21) inferred with BEAST2. The time scale, in years, is at the top. Thick branch edges correspond to posterior values ≥0.7. Brackets with letters correspond to outbreaks and/or phylogenetic clusters analyzed in depth. Meta-data is provided in four columns to the right of the trees. A star symbol in the first column indicates a sequence from a case without a source identified. A check mark in the second column indicates that the case was considered imported. The two color strips indicate association with an outbreak and the MeaNS distinct sequence ID (DSId) assigned to the N450 sequence (including named strain, where applicable) with the legend provided in panel (C). The bracket present in all trees indicates the clade including the MVi/Marikina City.PHL/10.18 N450 named strain. (D) Shades of grey are added to the outbreak strip to denote the identification of related cases as a result of the sequence analysis. High resolution, interactive versions are available at: https://itol.embl.de/shared/GzTsavRiNVS9 .

Journal: Frontiers in Microbiology

Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

doi: 10.3389/fmicb.2024.1475144

Figure Lengend Snippet: Phylogenetic analysis of measles genotype B3 strains detected in Canada, 2018–2020. (A,B) Maximum likelihood phylogenetic trees of the N450, 450 nucleotides, [(A) 27 sequences] and MF-NCR, 1018 nucleotides, [(B) 21 sequences] loci with 1,000 bootstrap replicates. Bold face indicates the genotype B3 reference sequence [N450 only (A)]. Italics are international sequences obtained from GenBank and for the N450 tree (A) represent WHO-named strains. Thick branch edges correspond to bootstrap values ≥0.7. (D) Maximum clade credibility phylogenetic tree of WGS-t sequences ( n = 21) inferred with BEAST2. The time scale, in years, is at the top. Thick branch edges correspond to posterior values ≥0.7. Brackets with letters correspond to outbreaks and/or phylogenetic clusters analyzed in depth. Meta-data is provided in four columns to the right of the trees. A star symbol in the first column indicates a sequence from a case without a source identified. A check mark in the second column indicates that the case was considered imported. The two color strips indicate association with an outbreak and the MeaNS distinct sequence ID (DSId) assigned to the N450 sequence (including named strain, where applicable) with the legend provided in panel (C). The bracket present in all trees indicates the clade including the MVi/Marikina City.PHL/10.18 N450 named strain. (D) Shades of grey are added to the outbreak strip to denote the identification of related cases as a result of the sequence analysis. High resolution, interactive versions are available at: https://itol.embl.de/shared/GzTsavRiNVS9 .

Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

Techniques: Sequencing, Stripping Membranes