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sanger sequencing data  (Mendeley Ltd)

 
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    Mendeley Ltd sanger sequencing data
    Sanger Sequencing Data, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sanger+sequence+data/data+sequencing/pm41344324-189-9-32
    Average 86 stars, based on 1 article reviews
    sanger sequencing data - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Protocol for enhancing CRISPR-Cas9 genome editing using histone deacetylase inhibition and engineered virus-like particle delivery
    Article Snippet: .. Raw Sanger Sequencing data , Mendeley , https://doi.org/10.17632/33tm3dd9dw.1. .. Raw immunofluorescent microscopy data , Mendeley , https://doi.org/10.17632/33tm3dd9dw.1.

    Article Title: A thioacrylamide-based compound directly counteracts hepatic fibrosis with profound anti-obesity action
    Article Snippet: .. The sequencing data supporting this study are openly available at Mendeley Data (doi 10.17632/49t2nkg73c.1). ..

    Article Title: Whole-genome sequence dataset of Pasteurella multocida strain EH32 isolated from buffaloes in Vietnam
    Article Snippet: .. The raw sequencing data are publicly in Mendeley data (DOI:10.17632/nyczcvbygc.1), and the draft genome assembly has been deposited in DDBJ/GenBank/EMBL (accession: JBRUXC000000000 ). ..

    RNA Sequencing:


    Article Title: Tescalcin is a phagocytic checkpoint driving immune escape and limiting immunotherapeutic efficacy in hepatocellular carcinoma.
    Article Snippet: .. These associations were independently 121 validated using single-cell RNA sequencing data (Mendeley Data: skrx2fz79n), which 122 confirmed a correlation between high TESC expression and diminished efficacy of αPD-1 123 therapy (Figure 1G). ..

    Article Title: Dynamin 2 Regulates Mitochondrial Mitotic Fission in Pulmonary Hypertension
    Article Snippet: .. Processed RNA-seq data are publicly available via Mendeley data (10.17632/m8s629jyg3.1). ..

    Article Title: The inhibitory effect of hepatic cancer energy metabolism on immune checkpoint therapy: perspectives from single-cell multi-omics analysis
    Article Snippet: .. Integrated single-cell RNA-seq data (GEO, Mendeley) were analyzed using Seurat, AUCell, pySCENIC, CellChat, and Monocle. ..

    Single Cell:

    Article Title: Tescalcin is a phagocytic checkpoint driving immune escape and limiting immunotherapeutic efficacy in hepatocellular carcinoma.
    Article Snippet: .. These associations were independently 121 validated using single-cell RNA sequencing data (Mendeley Data: skrx2fz79n), which 122 confirmed a correlation between high TESC expression and diminished efficacy of αPD-1 123 therapy (Figure 1G). ..

    Article Title: The inhibitory effect of hepatic cancer energy metabolism on immune checkpoint therapy: perspectives from single-cell multi-omics analysis
    Article Snippet: .. Integrated single-cell RNA-seq data (GEO, Mendeley) were analyzed using Seurat, AUCell, pySCENIC, CellChat, and Monocle. ..

    Expressing:

    Article Title: Tescalcin is a phagocytic checkpoint driving immune escape and limiting immunotherapeutic efficacy in hepatocellular carcinoma.
    Article Snippet: .. These associations were independently 121 validated using single-cell RNA sequencing data (Mendeley Data: skrx2fz79n), which 122 confirmed a correlation between high TESC expression and diminished efficacy of αPD-1 123 therapy (Figure 1G). ..



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    Characteristics of specimens and success of whole genome <t>sequencing.</t> (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.
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    Characteristics of specimens and success of whole genome <t>sequencing.</t> (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.
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    Image Search Results


    Characteristics of specimens and success of whole genome sequencing. (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.

    Journal: Frontiers in Microbiology

    Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

    doi: 10.3389/fmicb.2024.1475144

    Figure Lengend Snippet: Characteristics of specimens and success of whole genome sequencing. (A–D) Filled bars indicate whole genome sequences achieved, while open or diagonal bars indicate whole genome sequencing failure. Purple color: respiratory specimens; green color: urine. (C) The asterisks indicate a significant difference between mean crossing point (CP) values ( t -test) with a p value <0.0001. (E) Median coverage depth aggregated across 59 measles genomes (WGS-t) generated solely by Illumina sequencing. Depth coverage at each position was obtained through Galaxy using the tool SamTools depth for 59 genomes (samples with termini filled in and sanger patches were excluded from this). Sample termini were trimmed and proportions at each position were determined. Median (solid line) and 25th to 75th percentile (shaded area) values at each nucleotide position were plotted using ggPlot2 in R.

    Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

    Techniques: Sequencing, Generated, Illumina Sequencing

    Epidemiological curve of confirmed measles cases, 2018–2020, by genotype and sequencing coverage. Top panel: all confirmed cases ( n = 143). Middle panel: cases occurring in 2018 ( n = 29). Bottom panel: cases occurring in 2019 ( n = 113). All panels: blue-fill: genotype D8; yellow-fill: genotype B3; no fill: case without sequences. Bottom two panels: solid-fill: N-450, MF-NCR and WGS-t sequences obtained; diagonal pattern: N-450 and MF-NCR sequences obtained; horizontal pattern: N-450 sequence only. Letter indicates outbreak identifier; lack of a letter indicates isolated case. Check mark (√): case was imported. Asterisk (*): case with unknown source.

    Journal: Frontiers in Microbiology

    Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

    doi: 10.3389/fmicb.2024.1475144

    Figure Lengend Snippet: Epidemiological curve of confirmed measles cases, 2018–2020, by genotype and sequencing coverage. Top panel: all confirmed cases ( n = 143). Middle panel: cases occurring in 2018 ( n = 29). Bottom panel: cases occurring in 2019 ( n = 113). All panels: blue-fill: genotype D8; yellow-fill: genotype B3; no fill: case without sequences. Bottom two panels: solid-fill: N-450, MF-NCR and WGS-t sequences obtained; diagonal pattern: N-450 and MF-NCR sequences obtained; horizontal pattern: N-450 sequence only. Letter indicates outbreak identifier; lack of a letter indicates isolated case. Check mark (√): case was imported. Asterisk (*): case with unknown source.

    Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

    Techniques: Sequencing, Isolation

    Phylogenetic analysis of measles genotype B3 strains detected in Canada, 2018–2020. (A,B) Maximum likelihood phylogenetic trees of the N450, 450 nucleotides, [(A) 27 sequences] and MF-NCR, 1018 nucleotides, [(B) 21 sequences] loci with 1,000 bootstrap replicates. Bold face indicates the genotype B3 reference sequence [N450 only (A)]. Italics are international sequences obtained from GenBank and for the N450 tree (A) represent WHO-named strains. Thick branch edges correspond to bootstrap values ≥0.7. (D) Maximum clade credibility phylogenetic tree of WGS-t sequences ( n = 21) inferred with BEAST2. The time scale, in years, is at the top. Thick branch edges correspond to posterior values ≥0.7. Brackets with letters correspond to outbreaks and/or phylogenetic clusters analyzed in depth. Meta-data is provided in four columns to the right of the trees. A star symbol in the first column indicates a sequence from a case without a source identified. A check mark in the second column indicates that the case was considered imported. The two color strips indicate association with an outbreak and the MeaNS distinct sequence ID (DSId) assigned to the N450 sequence (including named strain, where applicable) with the legend provided in panel (C). The bracket present in all trees indicates the clade including the MVi/Marikina City.PHL/10.18 N450 named strain. (D) Shades of grey are added to the outbreak strip to denote the identification of related cases as a result of the sequence analysis. High resolution, interactive versions are available at: https://itol.embl.de/shared/GzTsavRiNVS9 .

    Journal: Frontiers in Microbiology

    Article Title: Genomic tools for post-elimination measles molecular epidemiology using Canadian surveillance data from 2018–2020

    doi: 10.3389/fmicb.2024.1475144

    Figure Lengend Snippet: Phylogenetic analysis of measles genotype B3 strains detected in Canada, 2018–2020. (A,B) Maximum likelihood phylogenetic trees of the N450, 450 nucleotides, [(A) 27 sequences] and MF-NCR, 1018 nucleotides, [(B) 21 sequences] loci with 1,000 bootstrap replicates. Bold face indicates the genotype B3 reference sequence [N450 only (A)]. Italics are international sequences obtained from GenBank and for the N450 tree (A) represent WHO-named strains. Thick branch edges correspond to bootstrap values ≥0.7. (D) Maximum clade credibility phylogenetic tree of WGS-t sequences ( n = 21) inferred with BEAST2. The time scale, in years, is at the top. Thick branch edges correspond to posterior values ≥0.7. Brackets with letters correspond to outbreaks and/or phylogenetic clusters analyzed in depth. Meta-data is provided in four columns to the right of the trees. A star symbol in the first column indicates a sequence from a case without a source identified. A check mark in the second column indicates that the case was considered imported. The two color strips indicate association with an outbreak and the MeaNS distinct sequence ID (DSId) assigned to the N450 sequence (including named strain, where applicable) with the legend provided in panel (C). The bracket present in all trees indicates the clade including the MVi/Marikina City.PHL/10.18 N450 named strain. (D) Shades of grey are added to the outbreak strip to denote the identification of related cases as a result of the sequence analysis. High resolution, interactive versions are available at: https://itol.embl.de/shared/GzTsavRiNVS9 .

    Article Snippet: Consensus sequences of Sanger sequencing data were generated with SeqManPro version 11 software (DNASTAR Lasergene, WI).

    Techniques: Sequencing, Stripping Membranes