rna-seq mapping and rna editing detection pipelines (Strongarm Inc)
90
Structured Review
Strongarm Inc
rna-seq mapping and rna editing detection pipelines
Rna Seq Mapping And Rna Editing Detection Pipelines, supplied by Strongarm Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna+sequency+data+processing/rna+sequencing+data/pmc08597231-66-3-3
Average 90 stars, based on 1 article reviews
Rna Seq Mapping And Rna Editing Detection Pipelines, supplied by Strongarm Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna+sequency+data+processing/rna+sequencing+data/pmc08597231-66-3-3
Average 90 stars, based on 1 article reviews
rna-seq mapping and rna editing detection pipelines - by Bioz Stars,
2026-09
90/100 stars
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1) Product Images from "The landscape of coding RNA editing events in pediatric cancer"
Article Title: The landscape of coding RNA editing events in pediatric cancer
Journal: BMC Cancer
doi: 10.1186/s12885-021-08956-5
Figure Legend Snippet: The StrongArm RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort
Techniques Used: RNA Sequencing, DNA Sequencing
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