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gse208750 processed single cell rna sequencing data  (Broad Clinical Labs)


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    Structured Review

    Broad Clinical Labs gse208750 processed single cell rna sequencing data
    Gse208750 Processed Single Cell Rna Sequencing Data, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 772 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna+sequency+data+processing/RNA+Sequencing/pm40349341-1024-142-153
    Average 96 stars, based on 772 article reviews
    gse208750 processed single cell rna sequencing data - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    other:

    Article Title: Eosinophilic Biliary Cystic Neoplasm of the Liver: A Case Report of an Unrecognized Subtype of Intrahepatic Biliary Neoplasm
    Article Snippet: To characterize genomic alterations, whole‐exome sequencing (WES) and RNA sequencing were performed: somatic variants were identified using MuTect2 (GATK, Broad Institute) and annotated with ANNOVAR (Data ).

    Article Title: Early differential impact of MeCP2 mutations on functional networks in Rett syndrome patient-derived human cortical organoids.
    Article Snippet: RNA-sequencing was performed by the Broad Institute Sequencing Platform.

    Single Cell:

    Article Title: Identification of Cell Subpopulation-Specific Driver Genes Reveals Ideal Candidates for Renal Cell Carcinoma Immunotherapy
    Article Snippet: .. Single-cell RNA sequencing data for RCC was obtained from the Single Cell Portal database (https://singlecell.broadinstitute.org/single_cell, accessed on 14 December 2024). ..

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..

    Article Title: Gpnmb defines a phagocytic state of microglia linked to cell death in prion disease mouse model.
    Article Snippet: .. The single-cell RNA-seq dataset reanalyzed in this study (26) is available from the Broad Institute Single Cell Portal under study SCP1962. ..

    Article Title: Macrophage NEDD4L restrains liver fibrosis by preventing scar-associated macrophage expansion via ubiquitination of phospho-SMAD3.
    Article Snippet: .. Macrophage NEDD4L is elevated during liver fibrosis development To understand the role of NEDD4L in liver fibrosis, we first analyzed public single-cell RNA sequencing (scRNA-seq) database (https://singlecell. broadinstitute.org). ..

    RNA Sequencing:

    Article Title: Identification of Cell Subpopulation-Specific Driver Genes Reveals Ideal Candidates for Renal Cell Carcinoma Immunotherapy
    Article Snippet: .. Single-cell RNA sequencing data for RCC was obtained from the Single Cell Portal database (https://singlecell.broadinstitute.org/single_cell, accessed on 14 December 2024). ..

    Article Title: A severe neurodevelopmental syndrome linked to a South Asian founder variant in the UFMylation adaptor CDK5RAP3
    Article Snippet: .. Trio exome and genome sequencing (AI-1, AI-2, AII-1), and singleton skeletal muscle RNA sequencing (RNA-seq; AII-1), were performed by the Broad Institute (MIT and Harvard University, USA) as described [ ]. ..

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..

    Article Title: Gpnmb defines a phagocytic state of microglia linked to cell death in prion disease mouse model.
    Article Snippet: .. The single-cell RNA-seq dataset reanalyzed in this study (26) is available from the Broad Institute Single Cell Portal under study SCP1962. ..

    Article Title: Macrophage NEDD4L restrains liver fibrosis by preventing scar-associated macrophage expansion via ubiquitination of phospho-SMAD3.
    Article Snippet: .. Macrophage NEDD4L is elevated during liver fibrosis development To understand the role of NEDD4L in liver fibrosis, we first analyzed public single-cell RNA sequencing (scRNA-seq) database (https://singlecell. broadinstitute.org). ..

    RNA sequencing:

    Article Title: PRECISE: A prognostic thyrocyte-derived gene signature for papillary thyroid carcinoma
    Article Snippet: 48 Purpose: Papillary thyroid carcinoma (PTC) exhibits heterogeneous behavior, underscoring the 49 need for effective biomarkers and improved risk stratification methods.. We developed a 50 thyrocyte–derived gene signature, Prognostic RNA Expression Cell-specific Integrated SignaturE 51 (PRECISE), using single-cell and single-nucleus RNA sequencing (RNAseq) and evaluated its 52 prognostic utility across cohorts.. 53 Patients and Methods: PRECISE was developed using a discovery cohort of PTC patients 54 (MDACC n=109, median follow-up=14 years).

    Generated:

    Article Title: PRECISE: A prognostic thyrocyte-derived gene signature for papillary thyroid carcinoma
    Article Snippet: 48 Purpose: Papillary thyroid carcinoma (PTC) exhibits heterogeneous behavior, underscoring the 49 need for effective biomarkers and improved risk stratification methods.. We developed a 50 thyrocyte–derived gene signature, Prognostic RNA Expression Cell-specific Integrated SignaturE 51 (PRECISE), using single-cell and single-nucleus RNA sequencing (RNAseq) and evaluated its 52 prognostic utility across cohorts.. 53 Patients and Methods: PRECISE was developed using a discovery cohort of PTC patients 54 (MDACC n=109, median follow-up=14 years).

    Sequencing:

    Article Title: A severe neurodevelopmental syndrome linked to a South Asian founder variant in the UFMylation adaptor CDK5RAP3
    Article Snippet: .. Trio exome and genome sequencing (AI-1, AI-2, AII-1), and singleton skeletal muscle RNA sequencing (RNA-seq; AII-1), were performed by the Broad Institute (MIT and Harvard University, USA) as described [ ]. ..

    Expressing:

    Article Title: TIPE2 gene knockdown in mice attenuates experimental colitis by diminishing inflammatory cell infiltration
    Article Snippet: .. The single-cell expression profile of TIPE2 in both normal and inflamed intestinal tissues was interrogated via the Single Cell Portal ( https://singlecell.broadinstitute.org/single_cell ) using single cell RNA sequencing dataset SCP259. ..



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