ripseq ngs web application (Pathogenomix Inc)
90
Structured Review
Pathogenomix Inc
ripseq ngs web application
Ripseq Ngs Web Application, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ripseq+web+application/ripseq+ngs+software/pm33893492-49-6-11
Average 90 stars, based on 1 article reviews
Ripseq Ngs Web Application, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ripseq+web+application/ripseq+ngs+software/pm33893492-49-6-11
Average 90 stars, based on 1 article reviews
ripseq ngs web application - by Bioz Stars,
2026-10
90/100 stars
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Related Articles
Next-Generation Sequencing:Article Title: Pleural space infection microbiology as assessed using a clinical sequencing-based assay: Fusobacterium nucleatum group, Streptococcus intermedius, and other oral normal microbiota are the most common bacteria identified in community-acquired pleural space infections. Article Snippet: The definition of the microbiology of pleural space infection has been challenging due to the poor yield of conventional culture.. Here, the results of a 16S ribosomal RNA gene PCR/sequencing assay performed on pleural fluid in routine clinical practice between August 2020 and January 2023 were evaluated.. Amplified 16S rRNA gene DNA was submitted to Sanger sequencing and/or next-generation sequencing or results were reported as negative, depending on PCR crossing threshold value. Article Title: Pathogen Detection in Infective Endocarditis Using Targeted Metagenomics on Whole Blood and Plasma: a Prospective Pilot Study. Article Snippet: Paired-end sequencing was done on an Illumina MiSeq using a 2 300 cycle V3 Nano kit (Illumina), followed by onboard Illumina processing (adapter trimming, index demultiplexing, and fastq generation). .. For bioinformatic analysis, files were processed using Article Title: The Brief Case: Human leptospirosis acquired in Minnesota and diagnosed using 16S ribosomal RNA gene PCR/next-generation sequencing of blood Article Snippet: A 72-year-old man from rural Minnesota presented to the emergency department in November 2023 with a 4-day history of fever, chills, vomiting, diarrhea, cough, and shortness of breath.. He had underlying sarcoidosis, bronchiectasis, paroxysmal atrial fibrillation, and sinus bradycardia and had a pacemaker in place.. He reported extensive zoonotic exposures in Minnesota during the 2 weeks before presentation, including deer hunting until 5 days before the symptom onset, consumption of cooked game meat, and freshwater exposure. Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum: A Distinct Entity of Pleural Infections. Article Snippet: .. For sequence data analysis, we used the Article Title: Comparison of the BioFire Joint Infection Panel to 16S Ribosomal RNA Gene-Based Targeted Metagenomic Sequencing for Testing Synovial Fluid from Patients with Knee Arthroplasty Failure. Article Snippet: Onboard Illumina processing included adapter trimming, index demultiplexing, and fastq generation. .. Files were processed using Article Title: Targeted Metagenomic Sequencing-based Approach Applied to 2146 Tissue and Body Fluid Samples in Routine Clinical Practice. Article Snippet: Bidirectional Sanger sequencing was performed on an Applied Biosystems 3500xl instrument (Thermo Fisher Scientific), and NGS was performed on an Illumina Miseq with a 500-cycle (2 × 250 paired-end read) v2 nano kit. .. Bioinformatic analysis was performed with Article Title: Clinical Use of a 16S Ribosomal RNA Gene-Based Sanger and/or Next Generation Sequencing Assay to Test Preoperative Synovial Fluid for Periprosthetic Joint Infection Diagnosis Article Snippet: An applied Biosystems 3500xl instrument (Thermo Fisher Scientific) was used for Sanger sequencing and an Illumina MiSeq with a 500 cycle (2 × 250 paired-end read) v2 nano kit for NGS. .. Sequencing results were processed with Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum : A Distinct Entity of Pleural Infections Article Snippet: .. For sequence data analysis, we used the Software:Article Title: Pleural space infection microbiology as assessed using a clinical sequencing-based assay: Fusobacterium nucleatum group, Streptococcus intermedius, and other oral normal microbiota are the most common bacteria identified in community-acquired pleural space infections. Article Snippet: The definition of the microbiology of pleural space infection has been challenging due to the poor yield of conventional culture.. Here, the results of a 16S ribosomal RNA gene PCR/sequencing assay performed on pleural fluid in routine clinical practice between August 2020 and January 2023 were evaluated.. Amplified 16S rRNA gene DNA was submitted to Sanger sequencing and/or next-generation sequencing or results were reported as negative, depending on PCR crossing threshold value. Article Title: Pathogen Detection in Infective Endocarditis Using Targeted Metagenomics on Whole Blood and Plasma: a Prospective Pilot Study. Article Snippet: Paired-end sequencing was done on an Illumina MiSeq using a 2 300 cycle V3 Nano kit (Illumina), followed by onboard Illumina processing (adapter trimming, index demultiplexing, and fastq generation). .. For bioinformatic analysis, files were processed using Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum: A Distinct Entity of Pleural Infections. Article Snippet: .. For sequence data analysis, we used the Article Title: Comparison of the BioFire Joint Infection Panel to 16S Ribosomal RNA Gene-Based Targeted Metagenomic Sequencing for Testing Synovial Fluid from Patients with Knee Arthroplasty Failure. Article Snippet: Onboard Illumina processing included adapter trimming, index demultiplexing, and fastq generation. .. Files were processed using Article Title: Targeted Metagenomic Sequencing-based Approach Applied to 2146 Tissue and Body Fluid Samples in Routine Clinical Practice. Article Snippet: Bidirectional Sanger sequencing was performed on an Applied Biosystems 3500xl instrument (Thermo Fisher Scientific), and NGS was performed on an Illumina Miseq with a 500-cycle (2 × 250 paired-end read) v2 nano kit. .. Bioinformatic analysis was performed with Article Title: Clinical Use of a 16S Ribosomal RNA Gene-Based Sanger and/or Next Generation Sequencing Assay to Test Preoperative Synovial Fluid for Periprosthetic Joint Infection Diagnosis Article Snippet: An applied Biosystems 3500xl instrument (Thermo Fisher Scientific) was used for Sanger sequencing and an Illumina MiSeq with a 500 cycle (2 × 250 paired-end read) v2 nano kit for NGS. .. Sequencing results were processed with Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum : A Distinct Entity of Pleural Infections Article Snippet: .. For sequence data analysis, we used the Amplification:Article Title: The Brief Case: Human leptospirosis acquired in Minnesota and diagnosed using 16S ribosomal RNA gene PCR/next-generation sequencing of blood Article Snippet: A 72-year-old man from rural Minnesota presented to the emergency department in November 2023 with a 4-day history of fever, chills, vomiting, diarrhea, cough, and shortness of breath.. He had underlying sarcoidosis, bronchiectasis, paroxysmal atrial fibrillation, and sinus bradycardia and had a pacemaker in place.. He reported extensive zoonotic exposures in Minnesota during the 2 weeks before presentation, including deer hunting until 5 days before the symptom onset, consumption of cooked game meat, and freshwater exposure. Sequencing:Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum: A Distinct Entity of Pleural Infections. Article Snippet: .. For sequence data analysis, we used the Article Title: Clinical Use of a 16S Ribosomal RNA Gene-Based Sanger and/or Next Generation Sequencing Assay to Test Preoperative Synovial Fluid for Periprosthetic Joint Infection Diagnosis Article Snippet: An applied Biosystems 3500xl instrument (Thermo Fisher Scientific) was used for Sanger sequencing and an Illumina MiSeq with a 500 cycle (2 × 250 paired-end read) v2 nano kit for NGS. .. Sequencing results were processed with Article Title: Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum : A Distinct Entity of Pleural Infections Article Snippet: .. For sequence data analysis, we used the |