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read-depth analysis  (Illumina Inc)


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    Illumina Inc read-depth analysis
    Read Depth Analysis, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/read-depth+analysis/read+depth+analysis/pm39779957-210-27-26
    Average 90 stars, based on 1 article reviews
    read-depth analysis - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Duplications and retrogenes are numerous and widespread in modern canine genomic assemblies
    Article Snippet: We apply two computational analyses to nine recently-released canine genome assemblies: genome assembly self-alignment, which involves the mapping of an assembly to itself in order to find matching duplicated segments [ ] and read-depth analysis, which searches for regions of unusually high coverage in Illumina sequencing data [ , ].

    Article Title: Structural polymorphism and diversity of human segmental duplications.
    Article Snippet: This translates into an overall higher gene copy number for duplicated genes (Fig. 6), an observation we confirmed both by genome assembly and Illumina read-depth analyses (Methods).

    Article Title: Structural polymorphism and diversity of human segmental duplications
    Article Snippet: We also note that Illumina read-depth and gene copy number analyses support this observation.

    Article Title: Gaps and complex structurally variant loci in phased genome assemblies
    Article Snippet: Based on Illumina read-depth analysis, we estimate that 86% of these additional alignments represent bona fide human copy number variation.

    Article Title: Duplications and Retrogenes Are Numerous and Widespread in Modern Canine Genomic Assemblies
    Article Snippet: We apply two computational analyses to nine recently released canine genome assemblies: genome assembly self-alignment, which involves the mapping of an assembly to itself in order to find matching duplicated segments ( ) and read-depth analysis, which searches for regions of unusually high coverage in Illumina sequencing data ( ; ).

    Article Title: Structural polymorphism and diversity of human segmental duplications
    Article Snippet: This translates into an overall higher gene copy number for duplicated genes (Fig. ), an observation we confirmed both by genome assembly and Illumina read-depth analyses ( ).

    Article Title: Structural polymorphism and diversity of human segmental duplications.
    Article Snippet: SDs are particularly prone to assembly errors or collapses, and this procedure both harmonized the results and allowed for all duplicated sequences to be validated by Illumina read-depth analysis.

    Sequencing:

    Article Title: Structural polymorphism and diversity of human segmental duplications
    Article Snippet: Because of the potential for assembly collapse, we restricted our analysis to 1KG samples where matched Illumina short-read sequence data were available, and the genomes passed QC and were all assembled with the same algorithm (Methods). .. SDs are particularly prone to assembly errors or collapses and this procedure both harmonized the results and allowed for all duplicated sequence to be validated by Illumina read-depth analysis. ..



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