pathway and ontology databases such as go, kegg, reactome, and (BioCarta)
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Pathway And Ontology Databases Such As Go, Kegg, Reactome, And, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/reactome+pathway+database/reactome/pmc03817400-34-55-58
Average 90 stars, based on 1 article reviews
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1) Product Images from "Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling"
Article Title: Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling
Journal: Molecular Systems Biology
doi: 10.1038/msb.2013.50
Figure Legend Snippet: Number and percentage of significant coevolved MSigDB groups in different methods
Techniques Used:
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Article Snippet: in total, 217,249 PPi pairs were retrieved from reactome (v.2014; http://www.reactome.org) (16), based on BioGrid, the database of interacting Proteins (17), Human Protein reference database (18), i2d (19), intacT (20) and MinT (21), in addition to gene co‐expression data generated by high‐throughput tech‐ niques such as yeast two‐hybrid, mass spectrometry pull‐down and dna microarray assays (22). a PPi network was generated with cytoscape (v.3.2.1; http://www.cytoscape.org) (23). .. Pathway enrichment analysis for the functional interaction network. reactome FiViz was utilized in cytoscape for pathway analysis (24). cell Map (http://www.pathwaycom‐ mons.org/pc/dbSnapshot.do?snapshot_id=8), reactome (16), Kyoto encyclopedia of Genes and Genomes (25), Panther Pathways (26), Cell Culture:Article Title: Identification of reversible and druggable pathways to improve beta-cell function and survival in Type 2 diabetes Article Snippet: .. INS1E cells were cultured in high glucose (HG, 20 mM) for 72 h or HG for an initial 24 h followed by drug addition (exendin-4, metformin and sodium salicylate) for the remaining 48 h. RNAseq (Illumina TruSeq), gene set enrichment analysis (GSEA) and pathway analysis (using Broad Institute, Reactome, KEGG and Biocarta platforms) were used to identify changes in molecular pathways. .. RNA sequencing:Article Title: Identification of reversible and druggable pathways to improve beta-cell function and survival in Type 2 diabetes Article Snippet: .. INS1E cells were cultured in high glucose (HG, 20 mM) for 72 h or HG for an initial 24 h followed by drug addition (exendin-4, metformin and sodium salicylate) for the remaining 48 h. RNAseq (Illumina TruSeq), gene set enrichment analysis (GSEA) and pathway analysis (using Broad Institute, Reactome, KEGG and Biocarta platforms) were used to identify changes in molecular pathways. .. |
