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ncode human long non-coding rna microarray  (Agilent technologies)


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    Structured Review

    Agilent technologies ncode human long non-coding rna microarray
    PVT1 expression in the hematopoietic system. a PVT1 isoforms detected in lymph node and/or white blood cells (www.noncode.org). FPKM from Illumina’s Human BodyMap 2.0 project are shown ( http://www.ensembl.info/2011/05/24/human-bodymap-2-0-data-from-illumina/ ). b Overall PVT1 expression in hematopoietic cell populations (GSE98791). Data from <t>Agilent-021441</t> NCode Human Long Non-coding RNA <t>microarray</t> were analyzed with Feature Extraction Software10.5 (Agilent) . The processed signal intensity of PVT1 is represented in the figure (HSC: hematopoietic stem cells, ET: in vitro-differentiated erythroblasts, MK: in vitro-derived megakaryocytes, GR: granulocytes, MONO: monocytes, B: B lymphocytes, NK: natural killer cells, CD4 + T: CD4 + T lymphocytes, CD8 + T: CD8 + T lymphocytes)
    Ncode Human Long Non Coding Rna Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ncode+human+non-coding+rna+microarray/pmc07104523-57-2-2
    Average 90 stars, based on 1 article reviews
    ncode human long non-coding rna microarray - by Bioz Stars, 2026-09
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    Images

    1) Product Images from "Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin"

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin

    Journal: Molecular Cancer

    doi: 10.1186/s12943-020-01187-5

    PVT1 expression in the hematopoietic system. a PVT1 isoforms detected in lymph node and/or white blood cells (www.noncode.org). FPKM from Illumina’s Human BodyMap 2.0 project are shown ( http://www.ensembl.info/2011/05/24/human-bodymap-2-0-data-from-illumina/ ). b Overall PVT1 expression in hematopoietic cell populations (GSE98791). Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) . The processed signal intensity of PVT1 is represented in the figure (HSC: hematopoietic stem cells, ET: in vitro-differentiated erythroblasts, MK: in vitro-derived megakaryocytes, GR: granulocytes, MONO: monocytes, B: B lymphocytes, NK: natural killer cells, CD4 + T: CD4 + T lymphocytes, CD8 + T: CD8 + T lymphocytes)
    Figure Legend Snippet: PVT1 expression in the hematopoietic system. a PVT1 isoforms detected in lymph node and/or white blood cells (www.noncode.org). FPKM from Illumina’s Human BodyMap 2.0 project are shown ( http://www.ensembl.info/2011/05/24/human-bodymap-2-0-data-from-illumina/ ). b Overall PVT1 expression in hematopoietic cell populations (GSE98791). Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) . The processed signal intensity of PVT1 is represented in the figure (HSC: hematopoietic stem cells, ET: in vitro-differentiated erythroblasts, MK: in vitro-derived megakaryocytes, GR: granulocytes, MONO: monocytes, B: B lymphocytes, NK: natural killer cells, CD4 + T: CD4 + T lymphocytes, CD8 + T: CD8 + T lymphocytes)

    Techniques Used: Expressing, Microarray, In Vitro, Derivative Assay

    Related Articles

    Microarray:

    Article Title: The non-coding RNA landscape of human hematopoiesis and leukemia.
    Article Snippet: The labeled cRNA was hybridized onto three platforms: the Arraystar Human lncRNA Microarray V2.0 (Agilent-033010), and the NCode Human Long Non-coding RNA microarray (Agilent-021441) and NCode Human miRNA Microarray V3 (Agilent021827).

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin
    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Article Title: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer.
    Article Snippet: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer Miao Wang, Xingyuan Xiao, Fuqing Zeng, Fei Xie, Yebin Fan, Chao Huang, Guosong Jiang, Liang Wang PII: S0378-1119(16)30568-6 DOI: doi: 10.1016/j.gene.2016.07.042 Reference: GENE 41475 To appear in: Gene Received date: 13 April 2016 Revised date: 11 July 2016 Accepted date: 18 July 2016 Please cite this article as: Wang, Miao, Xiao, Xingyuan, Zeng, Fuqing, Xie, Fei, Fan, Yebin, Huang, Chao, Jiang, Guosong, Wang, Liang, Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer, Gene (2016), doi: 10.1016/j.gene.2016.07.042 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.

    Expressing:

    Article Title: The non-coding RNA landscape of human hematopoiesis and leukemia.
    Article Snippet: The labeled cRNA was hybridized onto three platforms: the Arraystar Human lncRNA Microarray V2.0 (Agilent-033010), and the NCode Human Long Non-coding RNA microarray (Agilent-021441) and NCode Human miRNA Microarray V3 (Agilent021827).

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin
    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Article Title: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer.
    Article Snippet: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer Miao Wang, Xingyuan Xiao, Fuqing Zeng, Fei Xie, Yebin Fan, Chao Huang, Guosong Jiang, Liang Wang PII: S0378-1119(16)30568-6 DOI: doi: 10.1016/j.gene.2016.07.042 Reference: GENE 41475 To appear in: Gene Received date: 13 April 2016 Revised date: 11 July 2016 Accepted date: 18 July 2016 Please cite this article as: Wang, Miao, Xiao, Xingyuan, Zeng, Fuqing, Xie, Fei, Fan, Yebin, Huang, Chao, Jiang, Guosong, Wang, Liang, Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer, Gene (2016), doi: 10.1016/j.gene.2016.07.042 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.

    In Vitro:

    Article Title: The non-coding RNA landscape of human hematopoiesis and leukemia.
    Article Snippet: The labeled cRNA was hybridized onto three platforms: the Arraystar Human lncRNA Microarray V2.0 (Agilent-033010), and the NCode Human Long Non-coding RNA microarray (Agilent-021441) and NCode Human miRNA Microarray V3 (Agilent021827).

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin
    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Article Title: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer.
    Article Snippet: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer Miao Wang, Xingyuan Xiao, Fuqing Zeng, Fei Xie, Yebin Fan, Chao Huang, Guosong Jiang, Liang Wang PII: S0378-1119(16)30568-6 DOI: doi: 10.1016/j.gene.2016.07.042 Reference: GENE 41475 To appear in: Gene Received date: 13 April 2016 Revised date: 11 July 2016 Accepted date: 18 July 2016 Please cite this article as: Wang, Miao, Xiao, Xingyuan, Zeng, Fuqing, Xie, Fei, Fan, Yebin, Huang, Chao, Jiang, Guosong, Wang, Liang, Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer, Gene (2016), doi: 10.1016/j.gene.2016.07.042 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.

    Derivative Assay:

    Article Title: The non-coding RNA landscape of human hematopoiesis and leukemia.
    Article Snippet: The labeled cRNA was hybridized onto three platforms: the Arraystar Human lncRNA Microarray V2.0 (Agilent-033010), and the NCode Human Long Non-coding RNA microarray (Agilent-021441) and NCode Human miRNA Microarray V3 (Agilent021827).

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin
    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Article Title: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer.
    Article Snippet: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer Miao Wang, Xingyuan Xiao, Fuqing Zeng, Fei Xie, Yebin Fan, Chao Huang, Guosong Jiang, Liang Wang PII: S0378-1119(16)30568-6 DOI: doi: 10.1016/j.gene.2016.07.042 Reference: GENE 41475 To appear in: Gene Received date: 13 April 2016 Revised date: 11 July 2016 Accepted date: 18 July 2016 Please cite this article as: Wang, Miao, Xiao, Xingyuan, Zeng, Fuqing, Xie, Fei, Fan, Yebin, Huang, Chao, Jiang, Guosong, Wang, Liang, Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer, Gene (2016), doi: 10.1016/j.gene.2016.07.042 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.

    Labeling:

    Article Title: The non-coding RNA landscape of human hematopoiesis and leukemia.
    Article Snippet: The labeled cRNA was hybridized onto three platforms: the Arraystar Human lncRNA Microarray V2.0 (Agilent-033010), and the NCode Human Long Non-coding RNA microarray (Agilent-021441) and NCode Human miRNA Microarray V3 (Agilent021827).

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin
    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Article Title: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer.
    Article Snippet: Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer Miao Wang, Xingyuan Xiao, Fuqing Zeng, Fei Xie, Yebin Fan, Chao Huang, Guosong Jiang, Liang Wang PII: S0378-1119(16)30568-6 DOI: doi: 10.1016/j.gene.2016.07.042 Reference: GENE 41475 To appear in: Gene Received date: 13 April 2016 Revised date: 11 July 2016 Accepted date: 18 July 2016 Please cite this article as: Wang, Miao, Xiao, Xingyuan, Zeng, Fuqing, Xie, Fei, Fan, Yebin, Huang, Chao, Jiang, Guosong, Wang, Liang, Common and differentially expressed long noncoding RNAs for the characterization of high and low grade bladder cancer, Gene (2016), doi: 10.1016/j.gene.2016.07.042 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.



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    Image Search Results


    PVT1 expression in the hematopoietic system. a PVT1 isoforms detected in lymph node and/or white blood cells (www.noncode.org). FPKM from Illumina’s Human BodyMap 2.0 project are shown ( http://www.ensembl.info/2011/05/24/human-bodymap-2-0-data-from-illumina/ ). b Overall PVT1 expression in hematopoietic cell populations (GSE98791). Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) . The processed signal intensity of PVT1 is represented in the figure (HSC: hematopoietic stem cells, ET: in vitro-differentiated erythroblasts, MK: in vitro-derived megakaryocytes, GR: granulocytes, MONO: monocytes, B: B lymphocytes, NK: natural killer cells, CD4 + T: CD4 + T lymphocytes, CD8 + T: CD8 + T lymphocytes)

    Journal: Molecular Cancer

    Article Title: Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin

    doi: 10.1186/s12943-020-01187-5

    Figure Lengend Snippet: PVT1 expression in the hematopoietic system. a PVT1 isoforms detected in lymph node and/or white blood cells (www.noncode.org). FPKM from Illumina’s Human BodyMap 2.0 project are shown ( http://www.ensembl.info/2011/05/24/human-bodymap-2-0-data-from-illumina/ ). b Overall PVT1 expression in hematopoietic cell populations (GSE98791). Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) . The processed signal intensity of PVT1 is represented in the figure (HSC: hematopoietic stem cells, ET: in vitro-differentiated erythroblasts, MK: in vitro-derived megakaryocytes, GR: granulocytes, MONO: monocytes, B: B lymphocytes, NK: natural killer cells, CD4 + T: CD4 + T lymphocytes, CD8 + T: CD8 + T lymphocytes)

    Article Snippet: Data from Agilent-021441 NCode Human Long Non-coding RNA microarray were analyzed with Feature Extraction Software10.5 (Agilent) [ ].

    Techniques: Expressing, Microarray, In Vitro, Derivative Assay

    Levels of lncRNA expression were normalised to 18S and relative expression levels compared to the average level in the control samples for MPM tissues and MeT-5A for cell lines using the 2 −ΔΔCq method. (a) Unsupervised cluster analysis of the top 44 lncRNAs found to be differentially expressed between MeT-5A and MPM (H226, H28, MSTO, MM05) cell lines using NCode Long Noncoding RNA microarrays. All cell lines were profiled in duplicate. Red = regions over-expressed, Blue = regions under-expressed. (b) Nine candidate lncRNAs were technically validated in MPM cell lines using RT-qPCR. For RT-qPCR, lncRNA expression levels were normalised to 18S and are expressed relative to MeT-5A. (c) NR_003548 and BX648695 were significantly elevated in MPM tissues compared to benign pleura. Turkey box plots have median values represented by the line within the boxes, and the 25 th and 75 th percentiles represented by the upper and lower lines of the box. (d) 7 candidate lncRNAs were biologically validated in an extended panel of 10MPM cell lines. All candidates demonstrated consistent up-regulation of expression. MPM – Malignant Pleural Mesothelioma, lncRNA – long noncoding RNA, Ctrl – Benign Pleura, * statistically significant at P<0.05 (two-tailed t-test).

    Journal: PLoS ONE

    Article Title: Long Non Coding RNAs (lncRNAs) Are Dysregulated in Malignant Pleural Mesothelioma (MPM)

    doi: 10.1371/journal.pone.0070940

    Figure Lengend Snippet: Levels of lncRNA expression were normalised to 18S and relative expression levels compared to the average level in the control samples for MPM tissues and MeT-5A for cell lines using the 2 −ΔΔCq method. (a) Unsupervised cluster analysis of the top 44 lncRNAs found to be differentially expressed between MeT-5A and MPM (H226, H28, MSTO, MM05) cell lines using NCode Long Noncoding RNA microarrays. All cell lines were profiled in duplicate. Red = regions over-expressed, Blue = regions under-expressed. (b) Nine candidate lncRNAs were technically validated in MPM cell lines using RT-qPCR. For RT-qPCR, lncRNA expression levels were normalised to 18S and are expressed relative to MeT-5A. (c) NR_003548 and BX648695 were significantly elevated in MPM tissues compared to benign pleura. Turkey box plots have median values represented by the line within the boxes, and the 25 th and 75 th percentiles represented by the upper and lower lines of the box. (d) 7 candidate lncRNAs were biologically validated in an extended panel of 10MPM cell lines. All candidates demonstrated consistent up-regulation of expression. MPM – Malignant Pleural Mesothelioma, lncRNA – long noncoding RNA, Ctrl – Benign Pleura, * statistically significant at P<0.05 (two-tailed t-test).

    Article Snippet: Microarray profiling experiments were performed according to MIAME guidelines using NCode Human Non-coding RNA microarrays (Life Technologies) representing 17,112 non-coding RNAs and 22,074 mRNA probes.

    Techniques: Expressing, Quantitative RT-PCR, Two Tailed Test