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resource source identifier nebnext multiplex oligos for illumina  (New England Biolabs)


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    Structured Review

    New England Biolabs resource source identifier nebnext multiplex oligos for illumina
    Resource Source Identifier Nebnext Multiplex Oligos For Illumina, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 2195 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/multiplex+identifier/NEBNext+Multiplex+Oligos+for+Illumina/pm38306273-269-2-5
    Average 96 stars, based on 2195 article reviews
    resource source identifier nebnext multiplex oligos for illumina - by Bioz Stars, 2026-11
    96/100 stars

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    other:

    Article Title: Nucleosome fibre topology guides transcription factor binding to enhancers.
    Article Snippet: For cell cross-linking, 3 ml of formaldehyde cross-linking buffer (50 mM HEPES-KOH, pH 7.5, 100 mM NaCl, 1 mM EDTA, 0.5 mM EGTA, 11% formaldehyde) was added to 15 cm dishes (Corning, 430599) containing 30 ml medium and incubated at room temperature for 10 min with swirling every 2 min. Cross-linking was blocked by adding 1.65 ml 2.5 M glycine and incubating for 5 min with swirling at room temperature.

    Amplification:

    Article Title: Identification and genetic dissection of convergent persister cell states.
    Article Snippet: 12.5 μl NT (FC-131–1096, Illumina) was immediately added to stop the reaction. .. Tagmented cDNA was amplified in a 500 μl PCR with Q5 polymerase (M0491L, New England Biolabs): 100 μl 5× buffer, 10 μl 10 mM dNTPs (N0447L, New England Biolabs), 5 μl Q5 polymerase, 85 μl Q5 High GC Enhancer, 0.5 μM N70x (Nextera Index Kit v2 Set A, TG-131-2001, Illumina; or equivalent from Integrated DNA Technologies), 0.5 μM i50x (E7600S, New England Biolabs; or equivalent from Integrated DNA Technologies). .. Libraries were amplified until the early exponential phase (~16–18 cycles): 72 °C 3 min; 95 °C 30 s; cycle: 95 °C 10 s, 55 °C 30 s, 72 °C 30 s; 72 °C 5 min. PCR reactions were pooled (if the 500 μl reaction had been split into multiple PCR tubes), and 100 μl was taken, purified twice with AMPure XP beads (A63881, Beckman Coulter), and eluted in 30 μl water.

    Article Title: Identification and genetic dissection of convergent persister cell states
    Article Snippet: 12.5 μl NT (FC-131–1096, Illumina) was immediately added to stop the reaction. .. Tagmented cDNA was amplified in a 500 μl PCR with Q5 polymerase (M0491L, New England Biolabs): 100 μl 5× buffer, 10 μl 10 mM dNTPs (N0447L, New England Biolabs), 5 μl Q5 polymerase, 85 μl Q5 High GC Enhancer, 0.5 μM N70x (Nextera Index Kit v2 Set A, TG-131-2001, Illumina; or equivalent from Integrated DNA Technologies), 0.5 μM i50x (E7600S, New England Biolabs; or equivalent from Integrated DNA Technologies). .. Libraries were amplified until the early exponential phase (~16–18 cycles): 72 °C 3 min; 95 °C 30 s; cycle: 95 °C 10 s, 55 °C 30 s, 72 °C 30 s; 72 °C 5 min. PCR reactions were pooled (if the 500 μl reaction had been split into multiple PCR tubes), and 100 μl was taken, purified twice with AMPure XP beads (A63881, Beckman Coulter), and eluted in 30 μl water.

    Polymerase Chain Reaction:

    Article Title: Identification and genetic dissection of convergent persister cell states.
    Article Snippet: 12.5 μl NT (FC-131–1096, Illumina) was immediately added to stop the reaction. .. Tagmented cDNA was amplified in a 500 μl PCR with Q5 polymerase (M0491L, New England Biolabs): 100 μl 5× buffer, 10 μl 10 mM dNTPs (N0447L, New England Biolabs), 5 μl Q5 polymerase, 85 μl Q5 High GC Enhancer, 0.5 μM N70x (Nextera Index Kit v2 Set A, TG-131-2001, Illumina; or equivalent from Integrated DNA Technologies), 0.5 μM i50x (E7600S, New England Biolabs; or equivalent from Integrated DNA Technologies). .. Libraries were amplified until the early exponential phase (~16–18 cycles): 72 °C 3 min; 95 °C 30 s; cycle: 95 °C 10 s, 55 °C 30 s, 72 °C 30 s; 72 °C 5 min. PCR reactions were pooled (if the 500 μl reaction had been split into multiple PCR tubes), and 100 μl was taken, purified twice with AMPure XP beads (A63881, Beckman Coulter), and eluted in 30 μl water.

    Article Title: Endogenous neuronal DNA double-strand breaks are not sufficient to drive brain aging and neurodegeneration
    Article Snippet: Transposition was performed in a 50-μL reaction containing 4.7 μL TDE1 Tagment DNA enzyme (Illumina, 20034198), and the reaction was cleaned up (DNA Clean and Concentrator kit; Zymo, D4034). .. NEBNext Ultra II master mix (NEB, M0544L), SYBR Green I (Thermo Fisher Scientific, S7563), and 0.5 μM of sample-specific P5/P7 barcoded primer mix (NEB, E7335S, E7730S, and E7600S) were used to add barcodes and amplify the ATAC-seq samples by quantitative and limited PCR. ..

    Article Title: Epididymis-specific RNase A family genes regulate fertility and small RNA processing
    Article Snippet: The cDNA was purified using the MiniElute Reaction Cleanup kit and run on a precast 10% Urea PAGE gel (BioRad #4566033) for 45 min at 200V. cDNA corresponding to small RNAs, including miRNAs and full-length tRNAs, was cut from the gel using Cy5 imaging, and DNA gel extraction was performed. .. The extracted cDNA was used for PCR reaction for 12 cycles using Q5 Polymerase and NEB multiplex indexing primers (NEB #E7600S). ..

    Article Title: Nucleosome fibre topology guides transcription factor binding to enhancers.
    Article Snippet: Micrococcal nuclease (Worthington Biochemicals, LS004797) was added to a final concentration of 0, 1, 4, 16 or 64 U ml−1 and chromatin was digested for 2 min in a 37 °C water bath. .. The beads were then split into nine PCR tubes (to reduce the number of beads settling in individual PCR tubes during PCR cycling), and 10 μl NEBNext Ultra II Q5 Master Mix, 2 μl 10 μM NEBNext i5 primer, 2 μl 10 μM NEBNext i7 primer (NEB, E7600S) and 4 μl water were added. .. PCR was then performed according to the NEBNext Ultra II Library kit cycling conditions with 9 or 10 PCR cycles typically being used.

    Article Title: Identification and genetic dissection of convergent persister cell states
    Article Snippet: 12.5 μl NT (FC-131–1096, Illumina) was immediately added to stop the reaction. .. Tagmented cDNA was amplified in a 500 μl PCR with Q5 polymerase (M0491L, New England Biolabs): 100 μl 5× buffer, 10 μl 10 mM dNTPs (N0447L, New England Biolabs), 5 μl Q5 polymerase, 85 μl Q5 High GC Enhancer, 0.5 μM N70x (Nextera Index Kit v2 Set A, TG-131-2001, Illumina; or equivalent from Integrated DNA Technologies), 0.5 μM i50x (E7600S, New England Biolabs; or equivalent from Integrated DNA Technologies). .. Libraries were amplified until the early exponential phase (~16–18 cycles): 72 °C 3 min; 95 °C 30 s; cycle: 95 °C 10 s, 55 °C 30 s, 72 °C 30 s; 72 °C 5 min. PCR reactions were pooled (if the 500 μl reaction had been split into multiple PCR tubes), and 100 μl was taken, purified twice with AMPure XP beads (A63881, Beckman Coulter), and eluted in 30 μl water.

    Article Title: Epididymis-specific RNase A family genes regulate fertility and small RNA processing.
    Article Snippet: The cDNA was purified using the MiniElute Reaction Cleanup kit and run on a precast 10% Urea PAGE gel (BioRad #4566033) for 45 minutes at 200V. cDNA corresponding to small RNAs, including miRNAs and full-length tRNAs, was cut from the gel using Cy5 imaging, and DNA gel extraction was performed. .. The extracted cDNA was used for PCR reaction for 12 cycles using Q5 Polymerase and NEB multiplex indexing primers (NEB #E7600S). ..

    SYBR Green Assay:

    Article Title: Endogenous neuronal DNA double-strand breaks are not sufficient to drive brain aging and neurodegeneration
    Article Snippet: Transposition was performed in a 50-μL reaction containing 4.7 μL TDE1 Tagment DNA enzyme (Illumina, 20034198), and the reaction was cleaned up (DNA Clean and Concentrator kit; Zymo, D4034). .. NEBNext Ultra II master mix (NEB, M0544L), SYBR Green I (Thermo Fisher Scientific, S7563), and 0.5 μM of sample-specific P5/P7 barcoded primer mix (NEB, E7335S, E7730S, and E7600S) were used to add barcodes and amplify the ATAC-seq samples by quantitative and limited PCR. ..

    Multiplex Assay:

    Article Title: Epididymis-specific RNase A family genes regulate fertility and small RNA processing
    Article Snippet: The cDNA was purified using the MiniElute Reaction Cleanup kit and run on a precast 10% Urea PAGE gel (BioRad #4566033) for 45 min at 200V. cDNA corresponding to small RNAs, including miRNAs and full-length tRNAs, was cut from the gel using Cy5 imaging, and DNA gel extraction was performed. .. The extracted cDNA was used for PCR reaction for 12 cycles using Q5 Polymerase and NEB multiplex indexing primers (NEB #E7600S). ..

    Article Title: Epididymis-specific RNase A family genes regulate fertility and small RNA processing.
    Article Snippet: The cDNA was purified using the MiniElute Reaction Cleanup kit and run on a precast 10% Urea PAGE gel (BioRad #4566033) for 45 minutes at 200V. cDNA corresponding to small RNAs, including miRNAs and full-length tRNAs, was cut from the gel using Cy5 imaging, and DNA gel extraction was performed. .. The extracted cDNA was used for PCR reaction for 12 cycles using Q5 Polymerase and NEB multiplex indexing primers (NEB #E7600S). ..

    Chromatin Immunoprecipitation:

    Article Title: Nucleosome fibre topology guides transcription factor binding to enhancers.
    Article Snippet: ChIP reactions were quantified by Qubit 2.0 using the HS dsDNA quantification kit (Thermo Fisher Scientific, Q32854). .. ChIP–seq DNA libraries were prepared using the NEBNext Ultra II Library Preparation Kit (NEB, E7645S) with dual-index primers (NEB, E7600S). ..



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    Image Search Results


    Samples used as positive controls to validate the deep amplicon  sequencing  approach for the accurate detection of species composition.

    Journal: Frontiers in Veterinary Science

    Article Title: Development of a novel Haemabiome tool for the high-throughput analysis of haemopathogen species co-infections in African livestock

    doi: 10.3389/fvets.2024.1491828

    Figure Lengend Snippet: Samples used as positive controls to validate the deep amplicon sequencing approach for the accurate detection of species composition.

    Article Snippet: The second round of amplification was performed to anneal the Nextera II multiplex identifier tags (MID) and sequencing primers ( ).

    Techniques: Amplification, Sequencing, Cell Culture

    Phylogenetic tree of Anaplasma and Ehrlichia spp. determined in the subset of 31 IDEAL animals. Relationships were inferred from phylogenetic analysis of sequence data for a ~132-bp region of the 16S rRNA gene by Bayesian inference. Sequences obtained in this study are highlighted in bold with the number of samples with a specific pathogen sequence identified, indicated in brackets. Numbers at the nodes indicate % bootstrap support and the scale bar represents 0.1 substitutions per site.

    Journal: Frontiers in Veterinary Science

    Article Title: Development of a novel Haemabiome tool for the high-throughput analysis of haemopathogen species co-infections in African livestock

    doi: 10.3389/fvets.2024.1491828

    Figure Lengend Snippet: Phylogenetic tree of Anaplasma and Ehrlichia spp. determined in the subset of 31 IDEAL animals. Relationships were inferred from phylogenetic analysis of sequence data for a ~132-bp region of the 16S rRNA gene by Bayesian inference. Sequences obtained in this study are highlighted in bold with the number of samples with a specific pathogen sequence identified, indicated in brackets. Numbers at the nodes indicate % bootstrap support and the scale bar represents 0.1 substitutions per site.

    Article Snippet: The second round of amplification was performed to anneal the Nextera II multiplex identifier tags (MID) and sequencing primers ( ).

    Techniques: Sequencing

    Phylogenetic relationship among consensus sequences of Theileria and Babesia. spp. determined in IDEAL subset animals. Relationships were inferred from phylogenetic analysis of sequence data for a ~405-bp region of the 18S rRNA gene by Bayesian inference. Sequences obtained in this study are highlighted in bold with the number of samples with specific pathogen sequence identified indicated in brackets. Numbers at the nodes indicate % bootstrap support and the scale bar represents 0.1 substitutions per site.

    Journal: Frontiers in Veterinary Science

    Article Title: Development of a novel Haemabiome tool for the high-throughput analysis of haemopathogen species co-infections in African livestock

    doi: 10.3389/fvets.2024.1491828

    Figure Lengend Snippet: Phylogenetic relationship among consensus sequences of Theileria and Babesia. spp. determined in IDEAL subset animals. Relationships were inferred from phylogenetic analysis of sequence data for a ~405-bp region of the 18S rRNA gene by Bayesian inference. Sequences obtained in this study are highlighted in bold with the number of samples with specific pathogen sequence identified indicated in brackets. Numbers at the nodes indicate % bootstrap support and the scale bar represents 0.1 substitutions per site.

    Article Snippet: The second round of amplification was performed to anneal the Nextera II multiplex identifier tags (MID) and sequencing primers ( ).

    Techniques: Sequencing