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Macrogen microrna microarray analysis
Microrna Microarray Analysis, supplied by Macrogen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microrna+microarray+analysis/microrna+microarray+analysis/pm34263295-18-9-13
Average 90 stars, based on 1 article reviews
microrna microarray analysis - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Isolation:

Article Title: RAS-stimulated release of exosomal miR-494-3p promotes the osteolytic bone metastasis of breast cancer cells
Article Snippet: The cells were seeded in a cell culture dish (2.5×10 5 cells/ml), cultured for 24 h, and then transfected with nucleic acids (plasmids, 1 μ g per transfection; siRNAs or miRNAs, 10 or 100 μ M) using Lipofectamine 3000 (for plasmids, cat. no. L3000-015) or RNAiMAX (for siRNAs and miRNAs, cat. no. 13778-150) according to the manufacturer's instructions (Thermo Fisher Scientific, Inc.) After 48 h, the transfected cells were used for further experiments. .. Exosomes isolated from the MCF-7 cells transfected with control or KRASV12 were used for miRNA microarray analysis by Macrogen Inc. .. The miRNA microarray system with Affymetrix GeneChip ® 4.0 array (Affymetrix; Thermo Fisher Scientific, Inc.) containing 2,578 human mature miRNA oligonucleotide probes was used according to the manufacturer's recommended protocol (Affymetrix; Thermo Fisher Scientific, Inc.).

Article Title: Tumor-derived miR-6794-5p enhances cancer growth by promoting M2 macrophage polarization
Article Snippet: Samples were acquired with a CytoFLEX flow cytometer (Beckman Coulter, CA, USA). .. MiRNA microarray analysis was performed using exosomes isolated from the conditioned media of U251 cells overexpressing control vector and Bcl-w. MiRNA microarray analysis was provided by MACROGEN (Korea). .. The Affymetrix Genechip miRNA array process was performed according to the manufacturer’s protocol.

Transfection:

Article Title: RAS-stimulated release of exosomal miR-494-3p promotes the osteolytic bone metastasis of breast cancer cells
Article Snippet: The cells were seeded in a cell culture dish (2.5×10 5 cells/ml), cultured for 24 h, and then transfected with nucleic acids (plasmids, 1 μ g per transfection; siRNAs or miRNAs, 10 or 100 μ M) using Lipofectamine 3000 (for plasmids, cat. no. L3000-015) or RNAiMAX (for siRNAs and miRNAs, cat. no. 13778-150) according to the manufacturer's instructions (Thermo Fisher Scientific, Inc.) After 48 h, the transfected cells were used for further experiments. .. Exosomes isolated from the MCF-7 cells transfected with control or KRASV12 were used for miRNA microarray analysis by Macrogen Inc. .. The miRNA microarray system with Affymetrix GeneChip ® 4.0 array (Affymetrix; Thermo Fisher Scientific, Inc.) containing 2,578 human mature miRNA oligonucleotide probes was used according to the manufacturer's recommended protocol (Affymetrix; Thermo Fisher Scientific, Inc.).

Control:

Article Title: RAS-stimulated release of exosomal miR-494-3p promotes the osteolytic bone metastasis of breast cancer cells
Article Snippet: The cells were seeded in a cell culture dish (2.5×10 5 cells/ml), cultured for 24 h, and then transfected with nucleic acids (plasmids, 1 μ g per transfection; siRNAs or miRNAs, 10 or 100 μ M) using Lipofectamine 3000 (for plasmids, cat. no. L3000-015) or RNAiMAX (for siRNAs and miRNAs, cat. no. 13778-150) according to the manufacturer's instructions (Thermo Fisher Scientific, Inc.) After 48 h, the transfected cells were used for further experiments. .. Exosomes isolated from the MCF-7 cells transfected with control or KRASV12 were used for miRNA microarray analysis by Macrogen Inc. .. The miRNA microarray system with Affymetrix GeneChip ® 4.0 array (Affymetrix; Thermo Fisher Scientific, Inc.) containing 2,578 human mature miRNA oligonucleotide probes was used according to the manufacturer's recommended protocol (Affymetrix; Thermo Fisher Scientific, Inc.).

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells
Article Snippet: .. sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip ® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Article Title: Tumor-derived miR-6794-5p enhances cancer growth by promoting M2 macrophage polarization
Article Snippet: Samples were acquired with a CytoFLEX flow cytometer (Beckman Coulter, CA, USA). .. MiRNA microarray analysis was performed using exosomes isolated from the conditioned media of U251 cells overexpressing control vector and Bcl-w. MiRNA microarray analysis was provided by MACROGEN (Korea). .. The Affymetrix Genechip miRNA array process was performed according to the manufacturer’s protocol.

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells.
Article Snippet: .. The cells were then stained with hematoxylin and eosin (H&E), and then counted in at least five randomly selected microscopic fields (×100) per filter. miRNA array sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Microarray:

Article Title: RAS-stimulated release of exosomal miR-494-3p promotes the osteolytic bone metastasis of breast cancer cells
Article Snippet: The cells were seeded in a cell culture dish (2.5×10 5 cells/ml), cultured for 24 h, and then transfected with nucleic acids (plasmids, 1 μ g per transfection; siRNAs or miRNAs, 10 or 100 μ M) using Lipofectamine 3000 (for plasmids, cat. no. L3000-015) or RNAiMAX (for siRNAs and miRNAs, cat. no. 13778-150) according to the manufacturer's instructions (Thermo Fisher Scientific, Inc.) After 48 h, the transfected cells were used for further experiments. .. Exosomes isolated from the MCF-7 cells transfected with control or KRASV12 were used for miRNA microarray analysis by Macrogen Inc. .. The miRNA microarray system with Affymetrix GeneChip ® 4.0 array (Affymetrix; Thermo Fisher Scientific, Inc.) containing 2,578 human mature miRNA oligonucleotide probes was used according to the manufacturer's recommended protocol (Affymetrix; Thermo Fisher Scientific, Inc.).

Article Title: MicroRNAs as potential indicators of the development and progression of uterine leiomyoma.
Article Snippet: RNA samples (130 ng) were labeled with the FlashTagTM Biotin RNA Labeling Kit (Genisphere, Hatfield, PA, USA). .. The labeled RNA was quantified, fractionated and hybridized to the miR microarray according to the standard procedures provided by Macrogen Inc. (Seoul, Korea). .. The labeled RNA was heated to 99 ̊C for 5 min and then to 45 ̊C for 5 min. RNA-array hybridization was performed PLOS ONE | https://doi.org/10.1371/journal.pone.0268793 May 31, 2022 2 / 12 via agitation at 60 rotations per min for 16 h at 48 ̊C on an Affymetrix Hybridization oven.

Article Title: Comparative analysis of microRNA expression profiles in the colons of specific pathogen-free mice and germ-free mice.
Article Snippet: MicroRNAs play an important role in microbiota–host crosstalk.. In this study, we compared microRNA expression in whole colons of specific pathogen-free mice and germ-free mice.. Forty-eight microRNAs were differentially expressed by more than 2-fold.

Article Title: Highly Sensitive in Vitro Diagnostic System of Pandemic Influenza A (H1N1) Virus Infection with Specific MicroRNA as a Biomarker
Article Snippet: The concentration of extracted RNA was quantified by the NanoDrop 2000 (Thermo Fisher Scientific) and stored at −80 °C before use. .. For the exploration of biomarkers, extracted RNA was analyzed by nucleic acid analysis using microarray and qRT-PCR assays. miRNA microarray analysis was performed by Macrogen (Korea). ..

Article Title: Epstein-Barr virus-encoded miR-BART5-5p upregulates PD-L1 through PIAS3/pSTAT3 modulation, worsening clinical outcomes of PD-L1-positive gastric carcinomas.
Article Snippet: Background Epstein–Barr virus (EBV) is etiologically associated with ~ 10% of all gastric carcinomas.. However, the molecular mechanisms and roles of EBV miRNAs in gastric carcinoma oncogenesis are yet to be elucidated.. Methods MicroRNA microarray and TaqMan quantitative real-time RT-PCR were conducted.

Article Title: Tumor-derived miR-6794-5p enhances cancer growth by promoting M2 macrophage polarization
Article Snippet: Samples were acquired with a CytoFLEX flow cytometer (Beckman Coulter, CA, USA). .. MiRNA microarray analysis was performed using exosomes isolated from the conditioned media of U251 cells overexpressing control vector and Bcl-w. MiRNA microarray analysis was provided by MACROGEN (Korea). .. The Affymetrix Genechip miRNA array process was performed according to the manufacturer’s protocol.

Labeling:

Article Title: MicroRNAs as potential indicators of the development and progression of uterine leiomyoma.
Article Snippet: RNA samples (130 ng) were labeled with the FlashTagTM Biotin RNA Labeling Kit (Genisphere, Hatfield, PA, USA). .. The labeled RNA was quantified, fractionated and hybridized to the miR microarray according to the standard procedures provided by Macrogen Inc. (Seoul, Korea). .. The labeled RNA was heated to 99 ̊C for 5 min and then to 45 ̊C for 5 min. RNA-array hybridization was performed PLOS ONE | https://doi.org/10.1371/journal.pone.0268793 May 31, 2022 2 / 12 via agitation at 60 rotations per min for 16 h at 48 ̊C on an Affymetrix Hybridization oven.

Purification:

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells
Article Snippet: .. sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip ® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells.
Article Snippet: .. The cells were then stained with hematoxylin and eosin (H&E), and then counted in at least five randomly selected microscopic fields (×100) per filter. miRNA array sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Knockdown:

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells
Article Snippet: .. sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip ® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells.
Article Snippet: .. The cells were then stained with hematoxylin and eosin (H&E), and then counted in at least five randomly selected microscopic fields (×100) per filter. miRNA array sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).

Quantitative RT-PCR:

Article Title: Highly Sensitive in Vitro Diagnostic System of Pandemic Influenza A (H1N1) Virus Infection with Specific MicroRNA as a Biomarker
Article Snippet: The concentration of extracted RNA was quantified by the NanoDrop 2000 (Thermo Fisher Scientific) and stored at −80 °C before use. .. For the exploration of biomarkers, extracted RNA was analyzed by nucleic acid analysis using microarray and qRT-PCR assays. miRNA microarray analysis was performed by Macrogen (Korea). ..

Immunohistochemistry:

Article Title: Epstein-Barr virus-encoded miR-BART5-5p upregulates PD-L1 through PIAS3/pSTAT3 modulation, worsening clinical outcomes of PD-L1-positive gastric carcinomas.
Article Snippet: Background Epstein–Barr virus (EBV) is etiologically associated with ~ 10% of all gastric carcinomas.. However, the molecular mechanisms and roles of EBV miRNAs in gastric carcinoma oncogenesis are yet to be elucidated.. Methods MicroRNA microarray and TaqMan quantitative real-time RT-PCR were conducted.

In Situ Hybridization:

Article Title: Epstein-Barr virus-encoded miR-BART5-5p upregulates PD-L1 through PIAS3/pSTAT3 modulation, worsening clinical outcomes of PD-L1-positive gastric carcinomas.
Article Snippet: Background Epstein–Barr virus (EBV) is etiologically associated with ~ 10% of all gastric carcinomas.. However, the molecular mechanisms and roles of EBV miRNAs in gastric carcinoma oncogenesis are yet to be elucidated.. Methods MicroRNA microarray and TaqMan quantitative real-time RT-PCR were conducted.

Plasmid Preparation:

Article Title: Tumor-derived miR-6794-5p enhances cancer growth by promoting M2 macrophage polarization
Article Snippet: Samples were acquired with a CytoFLEX flow cytometer (Beckman Coulter, CA, USA). .. MiRNA microarray analysis was performed using exosomes isolated from the conditioned media of U251 cells overexpressing control vector and Bcl-w. MiRNA microarray analysis was provided by MACROGEN (Korea). .. The Affymetrix Genechip miRNA array process was performed according to the manufacturer’s protocol.

Staining:

Article Title: Syntenin-1-mediated small extracellular vesicles promotes cell growth, migration, and angiogenesis by increasing onco-miRNAs secretion in lung cancer cells.
Article Snippet: .. The cells were then stained with hematoxylin and eosin (H&E), and then counted in at least five randomly selected microscopic fields (×100) per filter. miRNA array sEVs were purified from control or syntenin knockdown NCI-H226 cells and miRNA array was performed by Macrogen Inc. (Seoul, Republic of Korea). .. The miRNA Microarray system with Affymetrix GeneChip® 4.0 array containing 2578 human mature miRNA oligonucleotide probes was used according to the manufacturer’s recommended protocol (Santa Clara, CA, USA).



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Validation of candidate <t>miRNAs.</t> Among the top rated nine miRNAs screened from our miRNA <t>microarray,</t> four miRNAs involving (A) hsa-miR-145-5p, (B) hsa-miR-497-5p, (C) hsa-miR-29a-3p and (D) hsa-miR-204-5p were also significantly altered in GSE40355. miRNA, microRNA.
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Image Search Results


Flowchart of microarray data analysis. Swine monocytes were exposed to Bb12 with or without the addition of a blocking antibody anti-TLR2. Groups were as follows: unstimulated swine monocytes, monocytes stimulated with Bb12 for 4 h, and swine monocytes incubated with anti-TLR2 antibody and Bb12 for 4 h. Microarray was performed, and 40 microRNAs with a MFI > 500 were selected for analysis of molecular interactions (KEGG analysis). The microRNAs were also analyzed for miRNA–mRNA interactions within TLR2 pathway targets (miRTarBase). After this, 15 miRNAs with a reported interaction with TLR2 pathway–related target proteins were selected to analyze with a multiple t test

Journal: Probiotics and Antimicrobial Proteins

Article Title: Immunomodulation by Bifidobacterium animalis subsp. lactis Bb12: Integrative Analysis of miRNA Expression and TLR2 Pathway–Related Target Proteins in Swine Monocytes

doi: 10.1007/s12602-021-09816-1

Figure Lengend Snippet: Flowchart of microarray data analysis. Swine monocytes were exposed to Bb12 with or without the addition of a blocking antibody anti-TLR2. Groups were as follows: unstimulated swine monocytes, monocytes stimulated with Bb12 for 4 h, and swine monocytes incubated with anti-TLR2 antibody and Bb12 for 4 h. Microarray was performed, and 40 microRNAs with a MFI > 500 were selected for analysis of molecular interactions (KEGG analysis). The microRNAs were also analyzed for miRNA–mRNA interactions within TLR2 pathway targets (miRTarBase). After this, 15 miRNAs with a reported interaction with TLR2 pathway–related target proteins were selected to analyze with a multiple t test

Article Snippet: A total of 2 μg RNA from each sample was sent for genome-wide microRNA microarray analysis using μParaflo® microfluidic biochip technology; this service was provided by LC Sciences (Houston, TX, USA).

Techniques: Microarray, Blocking Assay, Incubation

Comparison of qRT-PCR and microarray results. Log2 fold change expression between unstimulated monocytes and Bb12-stimulated cells by qRT-PCR and microarray

Journal: Probiotics and Antimicrobial Proteins

Article Title: Immunomodulation by Bifidobacterium animalis subsp. lactis Bb12: Integrative Analysis of miRNA Expression and TLR2 Pathway–Related Target Proteins in Swine Monocytes

doi: 10.1007/s12602-021-09816-1

Figure Lengend Snippet: Comparison of qRT-PCR and microarray results. Log2 fold change expression between unstimulated monocytes and Bb12-stimulated cells by qRT-PCR and microarray

Article Snippet: A total of 2 μg RNA from each sample was sent for genome-wide microRNA microarray analysis using μParaflo® microfluidic biochip technology; this service was provided by LC Sciences (Houston, TX, USA).

Techniques: Comparison, Quantitative RT-PCR, Microarray, Expressing

Mir-92b promoted osteogenesis in MSCs (A–B) The top three up/down-regulated microRNAs in De-Os-MSCs were listed, and verified by qPCR (B) (C–E) The scrambled control, let-7e, mir-10b, mir-20a, mir-92b, mir-371 and mir-373 were transduced into MSCs with lentiviruses. The overexpression of each microRNA was verified by qPCR (C). The infected MSCs were induced to undergo osteogenic differentiation for 10 days, then the calcium deposits were stained with Alizarin Red S (D), and quantified (E) (F) Total RNA was extracted from MSCs infected with mir-92b or scrambled control. The mRNA expression levels of Osterix, Runx2, OPN and ALP were detected by qPCR. β-actin was used as an internal control. The data was expressed as mean ​± ​SD (n ​= ​3). ∗p ​< ​0.05 (G–I) Total proteins were extracted from MSCs transduced with scrambled control or mir-92b. Then the proteins were analyzed by western blot using indicated antibodies. The protein levels of pERK (H) and pJNK (I) was normalized to ERK and JNK1 respectively. All the data represent mean ​± ​SD of three independent experiments. ∗p ​< ​0.05 (J–K) The mir-92b antagmir was transfected into MSCs, then the cells were treated with osteogenic induction medium for 10 days, the calcium deposits were stained with Alizarin Red S (J), the changes of osteogenesis-related genes was checked by qPCR (K).

Journal: Journal of Orthopaedic Translation

Article Title: De-osteogenic-differentiated mesenchymal stem cells accelerate fracture healing by mir-92b

doi: 10.1016/j.jot.2020.10.009

Figure Lengend Snippet: Mir-92b promoted osteogenesis in MSCs (A–B) The top three up/down-regulated microRNAs in De-Os-MSCs were listed, and verified by qPCR (B) (C–E) The scrambled control, let-7e, mir-10b, mir-20a, mir-92b, mir-371 and mir-373 were transduced into MSCs with lentiviruses. The overexpression of each microRNA was verified by qPCR (C). The infected MSCs were induced to undergo osteogenic differentiation for 10 days, then the calcium deposits were stained with Alizarin Red S (D), and quantified (E) (F) Total RNA was extracted from MSCs infected with mir-92b or scrambled control. The mRNA expression levels of Osterix, Runx2, OPN and ALP were detected by qPCR. β-actin was used as an internal control. The data was expressed as mean ​± ​SD (n ​= ​3). ∗p ​< ​0.05 (G–I) Total proteins were extracted from MSCs transduced with scrambled control or mir-92b. Then the proteins were analyzed by western blot using indicated antibodies. The protein levels of pERK (H) and pJNK (I) was normalized to ERK and JNK1 respectively. All the data represent mean ​± ​SD of three independent experiments. ∗p ​< ​0.05 (J–K) The mir-92b antagmir was transfected into MSCs, then the cells were treated with osteogenic induction medium for 10 days, the calcium deposits were stained with Alizarin Red S (J), the changes of osteogenesis-related genes was checked by qPCR (K).

Article Snippet: The microRNA microarray analysis was performed by the Annoroad Gene Technology Corporation (Beijing, China).

Techniques: Control, Over Expression, Infection, Staining, Expressing, Transduction, Western Blot, Transfection

Validation of candidate miRNAs. Among the top rated nine miRNAs screened from our miRNA microarray, four miRNAs involving (A) hsa-miR-145-5p, (B) hsa-miR-497-5p, (C) hsa-miR-29a-3p and (D) hsa-miR-204-5p were also significantly altered in GSE40355. miRNA, microRNA.

Journal: Molecular Medicine Reports

Article Title: Identification and bioinformatics analysis of miRNAs associated with human muscle invasive bladder cancer

doi: 10.3892/mmr.2017.7726

Figure Lengend Snippet: Validation of candidate miRNAs. Among the top rated nine miRNAs screened from our miRNA microarray, four miRNAs involving (A) hsa-miR-145-5p, (B) hsa-miR-497-5p, (C) hsa-miR-29a-3p and (D) hsa-miR-204-5p were also significantly altered in GSE40355. miRNA, microRNA.

Article Snippet: After assessing RNA quality and quantity, the miRNAs microarray analysis (Affymetrix microRNA 4.0 Array, Affymetrix, Inc., Santa Clara, CA, USA) was performed according to the manufacturer's instructions.

Techniques: Microarray