Review



microarray-based mrna profiling data  (Thermo Fisher)


Bioz Verified Symbol Thermo Fisher is a verified supplier
Bioz Manufacturer Symbol Thermo Fisher manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 90

    Structured Review

    Thermo Fisher microarray-based mrna profiling data
    Rank correlations between <t> microarray- </t> and real-time quantitative PCR–based gene expression
    Microarray Based Mrna Profiling Data, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/pmc04485108-467-26--1
    Average 90 stars, based on 1 article reviews
    microarray-based mrna profiling data - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling"

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    doi: 10.1073/pnas.1509322112

    Rank correlations between  microarray-  and real-time quantitative PCR–based gene expression
    Figure Legend Snippet: Rank correlations between microarray- and real-time quantitative PCR–based gene expression

    Techniques Used: Microarray

    Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).
    Figure Legend Snippet: Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).

    Techniques Used: Expressing, Microarray

    Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.
    Figure Legend Snippet: Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.

    Techniques Used: Expressing, Microarray

    Related Articles

    Microarray:

    Article Title: Mining Gene Expression Signature for the Detection of Pre-Malignant Melanocytes and Early Melanomas with Risk for Metastasis
    Article Snippet: .. Here, we used the high-throughput Affymetrix microarray approach to conduct class-comparison experiments to identify significantly up- and down-regulated genes in each transition of malignant transformation of melan-a mouse melanocyte lineage: from melan-a to 4C, 4C to 4C11−, and 4C11− to 4C11+ cells. ..

    Article Title: Mining Gene Expression Signature for the Detection of Pre-Malignant Melanocytes and Early Melanomas with Risk for Metastasis
    Article Snippet: .. The high-throughput Affymetrix microarray approach was used as a platform screening, as described above. ..

    Article Title: caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts
    Article Snippet: .. In this report, we demonstrate that caCORRECT improves the reproducibility and reliability of experimental results across several common Affymetrix microarray platforms. caCORRECT represents an advance over state-of-art quality control methods such as Harshlighting, and acts to improve gene expression calculation techniques such as PLIER, RMA and MAS5.0, because it incorporates spatial information into outlier detection as well as outlier information into probe normalization. ..

    Article Title: TobEA: an atlas of tobacco gene expression from seed to senescence
    Article Snippet: .. Along with 27219 other available sequences, these ESTs were assembled into a set of 40642 unigenes and used to design a custom Affymetrix expression microarray for tobacco. .. Affymetrix chips are a proven and widely accepted technology and the design service has been used successfully to generate a large number of custom chips for other research applications http://www.affymetrix.com .

    Transformation Assay:

    Article Title: Mining Gene Expression Signature for the Detection of Pre-Malignant Melanocytes and Early Melanomas with Risk for Metastasis
    Article Snippet: .. Here, we used the high-throughput Affymetrix microarray approach to conduct class-comparison experiments to identify significantly up- and down-regulated genes in each transition of malignant transformation of melan-a mouse melanocyte lineage: from melan-a to 4C, 4C to 4C11−, and 4C11− to 4C11+ cells. ..

    other:

    Article Title: Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes
    Article Snippet: To address this gap, we designed a custom Affymetrix microarray (here after called the AtMtDEFL array) with probe sets for known and predicted Arabidopsis and Medicago DEFL s and the closely-related family of maternally expressed genes ( MEG s) , .

    Article Title: cAMP Response Element Binding Protein Is Required for Differentiation of Respiratory Epithelium during Murine Development
    Article Snippet: All Affymetrix-microarray data presented in this manuscript is MIAME compliant and has been submitted to the European Bioinformatics Institute ArrayExpress repository, Cambridge, UK.

    Article Title: Regulatory Patterns of a Large Family of Defensin-Like Genes Expressed in Nodules of Medicago truncatula
    Article Snippet: Ten micrograms of biotin-labeled cRNA, fragmented as suggested by Affymetrix, was hybridized to a custom Affymetrix microarray, the AtMtDEFL array .

    Article Title: HIF-1α/Wnt signaling-dependent control of gene transcription regulates neuronal differentiation of glioblastoma stem cells
    Article Snippet: Microarray data (CEL files) were generated using default Affymetrix microarray analysis parameters (Command Console Suite Software by Affymetrix).

    Control:

    Article Title: caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts
    Article Snippet: .. In this report, we demonstrate that caCORRECT improves the reproducibility and reliability of experimental results across several common Affymetrix microarray platforms. caCORRECT represents an advance over state-of-art quality control methods such as Harshlighting, and acts to improve gene expression calculation techniques such as PLIER, RMA and MAS5.0, because it incorporates spatial information into outlier detection as well as outlier information into probe normalization. ..

    Gene Expression:

    Article Title: caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts
    Article Snippet: .. In this report, we demonstrate that caCORRECT improves the reproducibility and reliability of experimental results across several common Affymetrix microarray platforms. caCORRECT represents an advance over state-of-art quality control methods such as Harshlighting, and acts to improve gene expression calculation techniques such as PLIER, RMA and MAS5.0, because it incorporates spatial information into outlier detection as well as outlier information into probe normalization. ..

    Expressing:

    Article Title: TobEA: an atlas of tobacco gene expression from seed to senescence
    Article Snippet: .. Along with 27219 other available sequences, these ESTs were assembled into a set of 40642 unigenes and used to design a custom Affymetrix expression microarray for tobacco. .. Affymetrix chips are a proven and widely accepted technology and the design service has been used successfully to generate a large number of custom chips for other research applications http://www.affymetrix.com .



    Similar Products

    90
    Agilent technologies whole human genome oligo microarray-based mrna data
    Whole Human Genome Oligo Microarray Based Mrna Data, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/pmc06110586-134-7-1
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarray-based mrna data - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Arraystar inc microarray-based mrna/lncrna methylation analysis
    Microarray Based Mrna/Lncrna Methylation Analysis, supplied by Arraystar inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/microarray+based+mrna+lncrna+methylation+analysis/pm39857659-58-13-8
    Average 90 stars, based on 1 article reviews
    microarray-based mrna/lncrna methylation analysis - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Genechem microarray-based mrna expression profiling
    Microarray Based Mrna Expression Profiling, supplied by Genechem, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/microarray/pm35925441-103-1-7
    Average 90 stars, based on 1 article reviews
    microarray-based mrna expression profiling - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher microarray-based mrna-profiling data
    Microarray Based Mrna Profiling Data, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/pmc05664542-655-10-8
    Average 90 stars, based on 1 article reviews
    microarray-based mrna-profiling data - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Biotechnology Information microarray-based mrna expression data
    Microarray Based Mrna Expression Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/mrna+expression+data/pm28277612-42-0-30
    Average 90 stars, based on 1 article reviews
    microarray-based mrna expression data - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Scherf GmbH microarray-based transcriptome-wide mrna expression levels
    Meta-data of genes shown in the cluster analysis of whose <t> mRNA </t> expression correlated with log 10 IC 50 -values of vitamin C in the NCI tumor cell line panel .
    Microarray Based Transcriptome Wide Mrna Expression Levels, supplied by Scherf GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/mrna+microarray+hybridization/pmc05288649-285-22-31
    Average 90 stars, based on 1 article reviews
    microarray-based transcriptome-wide mrna expression levels - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Thermo Fisher microarray-based mrna profiling data
    Rank correlations between <t> microarray- </t> and real-time quantitative PCR–based gene expression
    Microarray Based Mrna Profiling Data, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/pmc04485108-467-26--1
    Average 90 stars, based on 1 article reviews
    microarray-based mrna profiling data - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Pathwork Diagnostics Inc a microarray-based assay to measure mrna transcripts in frozen tissues (1550 mrna transcripts) or in ffpe tissue samples (2000 mrna transcripts)
    Rank correlations between <t> microarray- </t> and real-time quantitative PCR–based gene expression
    A Microarray Based Assay To Measure Mrna Transcripts In Frozen Tissues (1550 Mrna Transcripts) Or In Ffpe Tissue Samples (2000 Mrna Transcripts), supplied by Pathwork Diagnostics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/a+microarray+based+assay+to+measure+mrna+transcripts+in+frozen+tissues++1550+mrna+transcripts++or+in+ffpe+tissue+samples++2000+mrna+transcripts+/pmc04857876-199-40-56
    Average 90 stars, based on 1 article reviews
    a microarray-based assay to measure mrna transcripts in frozen tissues (1550 mrna transcripts) or in ffpe tissue samples (2000 mrna transcripts) - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Novartis microarray-based mrna expression profiles
    Rank correlations between <t> microarray- </t> and real-time quantitative PCR–based gene expression
    Microarray Based Mrna Expression Profiles, supplied by Novartis, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/mrna+expression+profile+data/pmc02703880-60-17-11
    Average 90 stars, based on 1 article reviews
    microarray-based mrna expression profiles - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agendia BV microarray-based mrna expression test
    Rank correlations between <t> microarray- </t> and real-time quantitative PCR–based gene expression
    Microarray Based Mrna Expression Test, supplied by Agendia BV, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray-based+mrna/microarray+based+mrna+expression+test/pm18679706-178-5-20
    Average 90 stars, based on 1 article reviews
    microarray-based mrna expression test - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    Image Search Results


    Meta-data of genes shown in the cluster analysis of whose  mRNA  expression correlated with log 10 IC 50 -values of vitamin C in the NCI tumor cell line panel .

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Meta-data of genes shown in the cluster analysis of whose mRNA expression correlated with log 10 IC 50 -values of vitamin C in the NCI tumor cell line panel .

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Virus, Transduction, Activity Assay, Binding Assay, Coagulation, Phospho-proteomics, Residue, Sequencing, Membrane, Activation Assay, Control, Ubiquitin Proteomics

    Dendrograms and cluster image map of curcumin obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Dendrograms and cluster image map of curcumin obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Microarray

    Dendrograms and cluster image map of vitamin C obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Journal: Frontiers in Pharmacology

    Article Title: Pharmacogenomic Characterization and Isobologram Analysis of the Combination of Ascorbic Acid and Curcumin—Two Main Metabolites of Curcuma longa —in Cancer Cells

    doi: 10.3389/fphar.2017.00038

    Figure Lengend Snippet: Dendrograms and cluster image map of vitamin C obtained by hierarchical cluster analysis of mRNA expression of 40 genes in the NCI cell line panel as analyzed by the Novartis microarray platform . The dendrogram on the left shows the clustering of cell lines and the dendrogram on the top shows the clustering of genes. The cluster image map shows each single mRNA expression value obtained by microarray analysis. The expression values have been normalized and color-coded.

    Article Snippet: We correlated the IC 50 -values expressed on induction by curcumin and AA of 60 tumor cell lines by COMPARE analysis of microarray-based transcriptome-wide mRNA expression levels of these cell lines (Scherf et al., ).

    Techniques: Expressing, Microarray

    Rank correlations between  microarray-  and real-time quantitative PCR–based gene expression

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Rank correlations between microarray- and real-time quantitative PCR–based gene expression

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Microarray

    Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Expression of genes encoding ribosomal proteins and mitochondrial electron transport chain complexes I, III, IV, and V is reduced at the transition from CIN3 to cancer. (A) Twenty-four small and 35 large ribosomal subunit proteins (∼70% of all ribosomal proteins) are expressed at statistically significant reduced levels in cancers compared with precancerous CIN3 lesions. Histograms show measurements in cancers by all 177 Affymetrix microarray probe sets for ribosomal protein-encoding genes, normalized to levels measured in CIN3s. (B) Green dots in the five complexes of the mitochondrial electron transport chain indicate proteins with reduced gene expression in cancers. Box plots (Tukey) show the average distribution of gene expression of all differentially expressed ETC complex I, III, IV, and V components (median levels are in red).

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Expressing, Microarray

    Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling

    doi: 10.1073/pnas.1509322112

    Figure Lengend Snippet: Differential expression of estrogen-responsive genes correlates strongly with cervical cancer progression. (A) Hierarchical clustering of 128 specimens based on changes in gene expression measured by 365 Affymetrix probe sets measuring expression of 217 estrogen-responsive genes shows strong correlation with disease progression. (B) Box plots (Tukey) show the distribution of Affymetrix microarray-based gene expression measurements of CDKN2A (p16), ERα, and estrogen-responsive genes GREB1, PGR1, and AR. White and red horizontal lines indicate median expression levels.

    Article Snippet: An additional cryosection from each of 16 normal specimens, 13 CIN1/CIN2 specimens, 23 CIN3 specimens, and 16 cancer specimens was used to independently validate the Affymetrix microarray-based mRNA profiling data by RTQ-PCR.

    Techniques: Expressing, Microarray