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rotating microarray hybridization oven  (Agilent technologies)


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    Structured Review

    Agilent technologies rotating microarray hybridization oven
    Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA <t> microarray </t> dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.
    Rotating Microarray Hybridization Oven, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+oven/pmc11054952-207-31-34
    Average 90 stars, based on 1 article reviews
    rotating microarray hybridization oven - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes"

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    Journal: Non-Coding RNA

    doi: 10.3390/ncrna10020025

    Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.
    Figure Legend Snippet: Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Techniques Used: Microarray, Software

    Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.
    Figure Legend Snippet: Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Techniques Used: Microarray, Software

    Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.
    Figure Legend Snippet: Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.

    Techniques Used: Microarray, Quantitative RT-PCR

    ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).
    Figure Legend Snippet: ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).

    Techniques Used: Construct, Microarray

    Related Articles

    Gene Expression:

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes
    Article Snippet: Cy3-labeled cRNA was then purified using the RNeasy Mini Kit (Qiagen, Valencia, CA, USA) to purify the amplified cRNA samples before dye incorporation and cRNA yield was assessed via NanoVueTM Plus Spectrophotometer (GE Healthcare, Chicago, IL, USA). .. After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing. .. Slides were immediately scanned using the Agilent SureScan Microarray Scanner (G4900DA) with 3 μM resolution at 532 nm wavelength.

    Microarray:

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes
    Article Snippet: Cy3-labeled cRNA was then purified using the RNeasy Mini Kit (Qiagen, Valencia, CA, USA) to purify the amplified cRNA samples before dye incorporation and cRNA yield was assessed via NanoVueTM Plus Spectrophotometer (GE Healthcare, Chicago, IL, USA). .. After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing. .. Slides were immediately scanned using the Agilent SureScan Microarray Scanner (G4900DA) with 3 μM resolution at 532 nm wavelength.

    Article Title: Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse
    Article Snippet: Next, 100 μl of sample were placed onto the microarray slide, which was mounted into the Agilent Microarray Hybridization Chamber. .. The hybridization was carried out in a microarray hybridization oven (G2545A; Agilent Technologies, Inc) set to 65°C for 17 hours. .. Afterward microarray slides were washed according to the manufacturer's instructions and scanned using a GenePix 4000B Microarray Scanner (Molecular Devices, Inc, Sunnyvale, CA, USA).

    Article Title: Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii
    Article Snippet: .. Using comparative transcriptomics, namely Agilent microarray hybridization and suppression subtractive hybridization, we identified ~800 unigenes which are differently expressed under scleroglucan-producing and non-producing conditions. ..

    Article Title: Astrocyte-derived exosomes-transported miRNA-26a-5p ameliorates sevoflurane-induced cognitive dysfunction in aged mice.
    Article Snippet: Prolonged sevoflurane anesthesia is the primary factor contributing to the development of perioperative neurocognitive disorders (PND).. Recent studies have highlighted neuronal apoptosis and abnormal dendritic structures as crucial features of PND.. Astrocytes-derived exosomes (ADEs) have been identified as carriers of microRNAs (miRNAs), playing a vital role in cell-to-cell communication through transmitting genetic material.

    Article Title: Community assembly of organisms regulates soil microbial functional potential through dual mechanisms.
    Article Snippet: 1State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China 2College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, China 3Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China 4Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China 5College of Land and Environment, Shenyang Agricultural University, Shengyang, China 6Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China 7Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China 8Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China 9Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, China 10Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA

    Article Title: Mpox infection protects against re-challenge in rhesus macaques.
    Article Snippet: The modified aptamer binding reagents, SomaScan Assay, its performance characteristics, and specificity to human targets have been previously described.28 The assay used standard controls, including 12 hybridization normalization control sequences used to control for variability in the Agilent microarray readout Cell 186, 4652–4661.e1–e5, October 12, 2023 e4 ll OPEN ACCESS Article process, as well as five human calibrator control pooled serum replicates and 3 Quality Control (QC) pooled replicates used to mitigate batch effects and verify the quality of the assay run using standard acceptance criteria. .. The readout is performed using Agilent microarray hybridization, scan, and feature extraction technology. ..

    Article Title: Deciphering the Functional Analysis of Differentially Expressed MicroRNAs Associated with Colorectal Cancer
    Article Snippet: The labelled miRNA was then mixed with 10 Hi-RPM Hybridization buffer, 2 Hi-RPM Page 4/20 Hybridization spike-in solution, and 2 Agilent blocking agent. .. After incubation at 100°C, samples are immediately hybridised to Agilent SurePrint G3 Human miRNA Microarray 860K (Design ID: 070156) for 20 hours at 55°C in a rotating Agilent microarray hybridization oven. .. After the chips were hybridised, they were washed for 5 minutes with GE Wash Buffer 1 (Agilent) at room temperature and 5 minutes with GE Wash buffer 2 at 37°C (Agilent).

    Hybridization:

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes
    Article Snippet: Cy3-labeled cRNA was then purified using the RNeasy Mini Kit (Qiagen, Valencia, CA, USA) to purify the amplified cRNA samples before dye incorporation and cRNA yield was assessed via NanoVueTM Plus Spectrophotometer (GE Healthcare, Chicago, IL, USA). .. After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing. .. Slides were immediately scanned using the Agilent SureScan Microarray Scanner (G4900DA) with 3 μM resolution at 532 nm wavelength.

    Article Title: Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse
    Article Snippet: Next, 100 μl of sample were placed onto the microarray slide, which was mounted into the Agilent Microarray Hybridization Chamber. .. The hybridization was carried out in a microarray hybridization oven (G2545A; Agilent Technologies, Inc) set to 65°C for 17 hours. .. Afterward microarray slides were washed according to the manufacturer's instructions and scanned using a GenePix 4000B Microarray Scanner (Molecular Devices, Inc, Sunnyvale, CA, USA).

    Article Title: Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii
    Article Snippet: .. Using comparative transcriptomics, namely Agilent microarray hybridization and suppression subtractive hybridization, we identified ~800 unigenes which are differently expressed under scleroglucan-producing and non-producing conditions. ..

    Article Title: Astrocyte-derived exosomes-transported miRNA-26a-5p ameliorates sevoflurane-induced cognitive dysfunction in aged mice.
    Article Snippet: Prolonged sevoflurane anesthesia is the primary factor contributing to the development of perioperative neurocognitive disorders (PND).. Recent studies have highlighted neuronal apoptosis and abnormal dendritic structures as crucial features of PND.. Astrocytes-derived exosomes (ADEs) have been identified as carriers of microRNAs (miRNAs), playing a vital role in cell-to-cell communication through transmitting genetic material.

    Article Title: Community assembly of organisms regulates soil microbial functional potential through dual mechanisms.
    Article Snippet: 1State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China 2College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, China 3Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China 4Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China 5College of Land and Environment, Shenyang Agricultural University, Shengyang, China 6Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China 7Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China 8Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China 9Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, China 10Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA

    Article Title: Mpox infection protects against re-challenge in rhesus macaques.
    Article Snippet: The modified aptamer binding reagents, SomaScan Assay, its performance characteristics, and specificity to human targets have been previously described.28 The assay used standard controls, including 12 hybridization normalization control sequences used to control for variability in the Agilent microarray readout Cell 186, 4652–4661.e1–e5, October 12, 2023 e4 ll OPEN ACCESS Article process, as well as five human calibrator control pooled serum replicates and 3 Quality Control (QC) pooled replicates used to mitigate batch effects and verify the quality of the assay run using standard acceptance criteria. .. The readout is performed using Agilent microarray hybridization, scan, and feature extraction technology. ..

    Article Title: Deciphering the Functional Analysis of Differentially Expressed MicroRNAs Associated with Colorectal Cancer
    Article Snippet: The labelled miRNA was then mixed with 10 Hi-RPM Hybridization buffer, 2 Hi-RPM Page 4/20 Hybridization spike-in solution, and 2 Agilent blocking agent. .. After incubation at 100°C, samples are immediately hybridised to Agilent SurePrint G3 Human miRNA Microarray 860K (Design ID: 070156) for 20 hours at 55°C in a rotating Agilent microarray hybridization oven. .. After the chips were hybridised, they were washed for 5 minutes with GE Wash Buffer 1 (Agilent) at room temperature and 5 minutes with GE Wash buffer 2 at 37°C (Agilent).

    other:

    Article Title: Long noncoding RNA expression profile of infantile hemangioma identified by microarray analysis.
    Article Snippet: Infantile hemangioma (IH) is one of the most common vascular tumors of childhood.. Long noncoding RNAs (lncRNAs) play a critical role in angiogenesis, but their involvement in hemangioma remains unknown.. This study aimed to assess the expression profiles of lncRNAs in IH and adjacent normal tissue samples, exploring the biological functions of lncRNAs as well as their involvement in IH pathogenesis.

    Transcriptomics:

    Article Title: Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii
    Article Snippet: .. Using comparative transcriptomics, namely Agilent microarray hybridization and suppression subtractive hybridization, we identified ~800 unigenes which are differently expressed under scleroglucan-producing and non-producing conditions. ..

    Labeling:

    Article Title: Astrocyte-derived exosomes-transported miRNA-26a-5p ameliorates sevoflurane-induced cognitive dysfunction in aged mice.
    Article Snippet: Prolonged sevoflurane anesthesia is the primary factor contributing to the development of perioperative neurocognitive disorders (PND).. Recent studies have highlighted neuronal apoptosis and abnormal dendritic structures as crucial features of PND.. Astrocytes-derived exosomes (ADEs) have been identified as carriers of microRNAs (miRNAs), playing a vital role in cell-to-cell communication through transmitting genetic material.

    Article Title: Community assembly of organisms regulates soil microbial functional potential through dual mechanisms.
    Article Snippet: 1State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China 2College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, China 3Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China 4Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China 5College of Land and Environment, Shenyang Agricultural University, Shengyang, China 6Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China 7Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China 8Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China 9Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, China 10Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA

    Extraction:

    Article Title: Mpox infection protects against re-challenge in rhesus macaques.
    Article Snippet: The modified aptamer binding reagents, SomaScan Assay, its performance characteristics, and specificity to human targets have been previously described.28 The assay used standard controls, including 12 hybridization normalization control sequences used to control for variability in the Agilent microarray readout Cell 186, 4652–4661.e1–e5, October 12, 2023 e4 ll OPEN ACCESS Article process, as well as five human calibrator control pooled serum replicates and 3 Quality Control (QC) pooled replicates used to mitigate batch effects and verify the quality of the assay run using standard acceptance criteria. .. The readout is performed using Agilent microarray hybridization, scan, and feature extraction technology. ..

    Incubation:

    Article Title: Deciphering the Functional Analysis of Differentially Expressed MicroRNAs Associated with Colorectal Cancer
    Article Snippet: The labelled miRNA was then mixed with 10 Hi-RPM Hybridization buffer, 2 Hi-RPM Page 4/20 Hybridization spike-in solution, and 2 Agilent blocking agent. .. After incubation at 100°C, samples are immediately hybridised to Agilent SurePrint G3 Human miRNA Microarray 860K (Design ID: 070156) for 20 hours at 55°C in a rotating Agilent microarray hybridization oven. .. After the chips were hybridised, they were washed for 5 minutes with GE Wash Buffer 1 (Agilent) at room temperature and 5 minutes with GE Wash buffer 2 at 37°C (Agilent).



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    Image Search Results


    Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Top ten upregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Article Snippet: After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing.

    Techniques: Microarray, Software

    Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA  microarray  dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Top ten downregulated lncRNAs and mRNAs and their respective fold-changes and p -values based on the cDNA microarray dataset. The transcripts were statistically analyzed in the Agilent GeneSpring GX (v14.9.1) software using moderated t -test and Benjamin–Hochberg multiple testing corrections and had satisfied the p -value of <0.05 and fold-change cutoff of ±2.00. Data shown are from four independent experiments.

    Article Snippet: After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing.

    Techniques: Microarray, Software

    Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: Difference in lncRNA and mRNA fold-changes between the cDNA microarray and in-house RT-qPCR experiments. Data shown are from three independent experiments (in triplicates) with calculated SD values to represent error bars and their statistical analyses were conducted using one-way ANOVA.

    Article Snippet: After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing.

    Techniques: Microarray, Quantitative RT-PCR

    ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).

    Journal: Non-Coding RNA

    Article Title: Possible Involvement of Long Non-Coding RNAs GNAS-AS1 and MIR205HG in the Modulation of 5-Fluorouracil Chemosensitivity in Colon Cancer Cells through Increased Extracellular Release of Exosomes

    doi: 10.3390/ncrna10020025

    Figure Lengend Snippet: ( A ) LncRNA-mRNA interaction network was constructed based on the ten selected candidate lncRNAs from the cDNA microarray dataset. The resulting mRNA interactions were predicted using the “rtool” database with −20 kcal as the minimum energy threshold and were filtered to show only mRNAs that were also dysregulated in the dataset. Data were visualized using Cytoscape v3.8.2. (Pink diamond = candidate lncRNA, blue circle = predicted putative mRNA targets). ( B ) A total of nine mRNAs were identified as both responsible in the “regulated exocytosis” hit as well as highly likely to be regulated by the candidate lncRNAs listed in ( A ). Data were visualized using Cytoscape v3.8.2. (pink diamond = candidate regulator lncRNA, blue circle = mRNA predicted involved in the biological process).

    Article Snippet: After fragmentation steps following the manufacturer’s protocol, the cRNAs were immediately hybridized into the Agilent SurePrint G3 Human Gene Expression v3 8x60K for 17 h at 65 °C in a rotating microarray hybridization oven (Agilent, Santa Clara, CA, USA) prior to washing.

    Techniques: Construct, Microarray

     Microarray  quality control parameters.

    Journal: BMC Bioinformatics

    Article Title: Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

    doi: 10.1186/1471-2105-4-37

    Figure Lengend Snippet: Microarray quality control parameters.

    Article Snippet: After fragmentation in pieces of 50 to 200 bases long, 15 μg of labeled cRNA sample was hybridized onto oligonucleotide U133A microarrays, using standard protocols with the Affymetrix microarray oven and fluidics station at the Columbia University Genome Center.

    Techniques: Microarray

    Fold changes obtained by microarray (fill) and by qPCR (hatched) when fed the M diet (dark grey) or the V diet (light grey) for genes involved in sensory perception (R23h versus A22h), immunity (R23h versus AB1h) and for amino acid metabolism (R23h versus A22h).

    Journal: PLoS ONE

    Article Title: Detection of new pathways involved in the acceptance and the utilisation of a plant-based diet in isogenic lines of rainbow trout fry

    doi: 10.1371/journal.pone.0201462

    Figure Lengend Snippet: Fold changes obtained by microarray (fill) and by qPCR (hatched) when fed the M diet (dark grey) or the V diet (light grey) for genes involved in sensory perception (R23h versus A22h), immunity (R23h versus AB1h) and for amino acid metabolism (R23h versus A22h).

    Article Snippet: Hybridisation was performed in a microarray hybridisation oven (Agilent) for 17h at 65°C.

    Techniques: Microarray

    Correlation between gene expression patterns obtained through real-time PCR and  microarray  approaches.

    Journal: PLoS ONE

    Article Title: Detection of new pathways involved in the acceptance and the utilisation of a plant-based diet in isogenic lines of rainbow trout fry

    doi: 10.1371/journal.pone.0201462

    Figure Lengend Snippet: Correlation between gene expression patterns obtained through real-time PCR and microarray approaches.

    Article Snippet: Hybridisation was performed in a microarray hybridisation oven (Agilent) for 17h at 65°C.

    Techniques: Expressing, Real-time Polymerase Chain Reaction, Microarray