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genesifter® microarray expression analysis software  (VizX Labs)

 
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    VizX Labs genesifter® microarray expression analysis software
    Genesifter® Microarray Expression Analysis Software, supplied by VizX Labs, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+data+analysis+raw+data/genesifter+microarray+data+analysis+system/us09546383-556-0-1
    Average 90 stars, based on 1 article reviews
    genesifter® microarray expression analysis software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Effects of extracellular matrix and neighboring cells on induction of human embryonic stem cells into retinal or retinal pigment epithelial progenitors
    Article Snippet: Data was analyzed with Affymetrix Micro array Suite 5.0, and GeneSifter web-based microarray analysis system (VizX Labs, Seattle, WA).

    Microarray:

    Article Title: Modulation of the anti-cancer efficacy of microtubule-targeting agents by cellular growth conditions
    Article Snippet: .. Data was processed with the GeneSifter (VizX Labs) microarray analysis system. ..

    Article Title: Modulation of the anti-cancer efficacy of microtubule-targeting agents by cellular growth conditions
    Article Snippet: .. Microarray data was processed with the GeneSifter (VizX Labs) microarray analysis system. .. We screened the data by eliminating genes that changed by less than 2-fold, and by only including genes that were flagged as “P” or “present” by the Affymetrix MAS5 algorithm.

    Article Title: Disseminated and Rapidly Fatal Tuberculosis in Mice Bearing a Defective Allele AT IRF-8
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (Day 30 and 70) groups for B6 mice. ..

    Article Title: Human pluripotent embryonic stem cells produced by nuclear transfer using a somatic cell nucleus treated with HVJ-E extract and an oocyte from a donor cycle that produced 15 or fewer oocytes
    Article Snippet: .. GeneSifter® (VizX Labs, Seattle, Wash.) microarray expression analysis software was used to identify differentially expressed transcripts. ..

    Article Title: GENETIC AND FUNCTIONAL CHARACTERIZATION OF THE MOUSE TRL3 LOCUS IN DEFENSE AGAINST TUBERCULOSIS
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (day 30 and 70) groups for B6, D2, D2.B6-Chr7 and D2.B6-Chr19 mice individually. ..

    Generated:

    Article Title: Disseminated and Rapidly Fatal Tuberculosis in Mice Bearing a Defective Allele AT IRF-8
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (Day 30 and 70) groups for B6 mice. ..

    Article Title: GENETIC AND FUNCTIONAL CHARACTERIZATION OF THE MOUSE TRL3 LOCUS IN DEFENSE AGAINST TUBERCULOSIS
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (day 30 and 70) groups for B6, D2, D2.B6-Chr7 and D2.B6-Chr19 mice individually. ..

    Control:

    Article Title: Disseminated and Rapidly Fatal Tuberculosis in Mice Bearing a Defective Allele AT IRF-8
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (Day 30 and 70) groups for B6 mice. ..

    Article Title: GENETIC AND FUNCTIONAL CHARACTERIZATION OF THE MOUSE TRL3 LOCUS IN DEFENSE AGAINST TUBERCULOSIS
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (day 30 and 70) groups for B6, D2, D2.B6-Chr7 and D2.B6-Chr19 mice individually. ..

    Infection:

    Article Title: Disseminated and Rapidly Fatal Tuberculosis in Mice Bearing a Defective Allele AT IRF-8
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (Day 30 and 70) groups for B6 mice. ..

    Article Title: GENETIC AND FUNCTIONAL CHARACTERIZATION OF THE MOUSE TRL3 LOCUS IN DEFENSE AGAINST TUBERCULOSIS
    Article Snippet: .. The GeneSifter TM microarray data analysis system (VizX Labs, Seattle, WA, USA; www.genesifter.net ) was used to analyze data generated from comparisons between control (uninfected) and M. tuberculosis -infected (day 30 and 70) groups for B6, D2, D2.B6-Chr7 and D2.B6-Chr19 mice individually. ..

    Expressing:

    Article Title: Human pluripotent embryonic stem cells produced by nuclear transfer using a somatic cell nucleus treated with HVJ-E extract and an oocyte from a donor cycle that produced 15 or fewer oocytes
    Article Snippet: .. GeneSifter® (VizX Labs, Seattle, Wash.) microarray expression analysis software was used to identify differentially expressed transcripts. ..

    Software:

    Article Title: Human pluripotent embryonic stem cells produced by nuclear transfer using a somatic cell nucleus treated with HVJ-E extract and an oocyte from a donor cycle that produced 15 or fewer oocytes
    Article Snippet: .. GeneSifter® (VizX Labs, Seattle, Wash.) microarray expression analysis software was used to identify differentially expressed transcripts. ..



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    Microarray analysis using mRNA from p16−/− BMDM compared to p16+/+ BMDM showed (A) decreased mRNA expression of classically activated macrophages-associated genes and (B) increased mRNA expression of alternatively activated macrophages-associated genes. Data is expressed as fold change relative to p16+/+ BMDM. (C) Differential gene expression in p16−/− BMDM relative to p16+/+ BMDM was correlated with the changes induced in IL-4-induced p16+/+ AAMφ. The figure shows 2log values of the probesets significantly (p<0.05) regulated only in p16−/− BMDM (red dots), only in IL-4-polarized p16+/+ AAMφ (green dots) and by both conditions (blue dots), compared to p16+/+ BMDM. The X-axis represents differences in gene expression induced by IL-4, whereas the Y-axis represents the effect of p16INKa-deficiency. These comparisons are depicted in the schematic representation of the protocol in the corresponding colors. Pearson Correlation analysis was done for probesets differentially expressed by both conditions (blue). (D) Heat map of p16+/+ BMDM, p16−/− BMDM, IL-4-polarized p16+/+ and p16−/− AAMφ gene expression profiles. Colors fluctuate from blue (poorly expressed) to green (intermediate expression) and yellow (high expression). Additional information regarding gene description, fold induction, and p-value can be found in Table S3.

    Journal: Blood

    Article Title: p16 INK4a deficiency promotes IL-4-induced polarization and inhibits proinflammatory signaling in macrophages

    doi: 10.1182/blood-2010-10-313106

    Figure Lengend Snippet: Microarray analysis using mRNA from p16−/− BMDM compared to p16+/+ BMDM showed (A) decreased mRNA expression of classically activated macrophages-associated genes and (B) increased mRNA expression of alternatively activated macrophages-associated genes. Data is expressed as fold change relative to p16+/+ BMDM. (C) Differential gene expression in p16−/− BMDM relative to p16+/+ BMDM was correlated with the changes induced in IL-4-induced p16+/+ AAMφ. The figure shows 2log values of the probesets significantly (p<0.05) regulated only in p16−/− BMDM (red dots), only in IL-4-polarized p16+/+ AAMφ (green dots) and by both conditions (blue dots), compared to p16+/+ BMDM. The X-axis represents differences in gene expression induced by IL-4, whereas the Y-axis represents the effect of p16INKa-deficiency. These comparisons are depicted in the schematic representation of the protocol in the corresponding colors. Pearson Correlation analysis was done for probesets differentially expressed by both conditions (blue). (D) Heat map of p16+/+ BMDM, p16−/− BMDM, IL-4-polarized p16+/+ and p16−/− AAMφ gene expression profiles. Colors fluctuate from blue (poorly expressed) to green (intermediate expression) and yellow (high expression). Additional information regarding gene description, fold induction, and p-value can be found in Table S3.

    Article Snippet: We thank E. Vallez for mouse breeding, J. Brozek (Genfit SA, Loos, France) for microarray raw data analysis, T. Coevoet, N. Jouy and A. Lucas for technical assistance.

    Techniques: Microarray, Expressing, Gene Expression

    Representation of the relative microarray intensity values from a selection of down-regulated genes in p16+/+ and p16−/− BMDM with or without polarization (AAMφ) by 15 ng/mL IL-4 from day 0 of differentiation. Statistically significant differences are indicated (a: p<0.05 compared to p16+/+ BMDM; b: p<0.05 compared to p16−/− BMDM; c: p<0.05 compared to p16+/+ AAMφ.)

    Journal: Blood

    Article Title: p16 INK4a deficiency promotes IL-4-induced polarization and inhibits proinflammatory signaling in macrophages

    doi: 10.1182/blood-2010-10-313106

    Figure Lengend Snippet: Representation of the relative microarray intensity values from a selection of down-regulated genes in p16+/+ and p16−/− BMDM with or without polarization (AAMφ) by 15 ng/mL IL-4 from day 0 of differentiation. Statistically significant differences are indicated (a: p<0.05 compared to p16+/+ BMDM; b: p<0.05 compared to p16−/− BMDM; c: p<0.05 compared to p16+/+ AAMφ.)

    Article Snippet: We thank E. Vallez for mouse breeding, J. Brozek (Genfit SA, Loos, France) for microarray raw data analysis, T. Coevoet, N. Jouy and A. Lucas for technical assistance.

    Techniques: Microarray, Selection

    Validation of DNA Microarray Results by qPCR

    Journal: Investigative Ophthalmology & Visual Science

    Article Title: Perimysial Fibroblasts of Extraocular Muscle, as Unique as the Muscle Fibers

    doi: 10.1167/iovs.08-2857

    Figure Lengend Snippet: Validation of DNA Microarray Results by qPCR

    Article Snippet: DNA Microarray Data Analysis Raw data from microarray scans were analyzed with microarray analysis software (GCOS 2.0; Affymetrix).

    Techniques: Biomarker Discovery, Microarray