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Biotechnology Information dna microarray data (cel files)
Dna Microarray Data (Cel Files), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Microarray:

Article Title: Responses of muscle mass, strength and gene transcripts to long-term heat stress in healthy human subjects.
Article Snippet: The present study was performed to investigate the effects of long-term heat stress on mass, strength and gene expression profile of human skeletal muscles without exercise training.. Eight healthy men were subjected to 10-week application of heat stress, which was performed for the quadriceps muscles for 8 h/day and 4 days/week by using a heatand steam-generating sheet.. Maximum isometric force during knee extension of the heated leg significantly increased after heat stress (*5.8%, P \ 0.05).

Article Title: KLF5 protects the intestinal epithelium against Th17 immune response in a murine colitis model
Article Snippet: .. Meta-analysis of DNA microarray data from 2 independent National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) data sets showed significant decreases of KLF5 mRNA levels in inflamed (affected) regions of UC samples when compared with either unaffected regions or healthy individuals ( ) ( ). ..

Article Title: Seasoning ingredients in a medium-fat diet regulate lipid metabolism in peripheral tissues via the hypothalamic-pituitary axis in growing rats.
Article Snippet: For gene ontology analysis, DEGs were subjected to the software packages of Ingenuity Pathway Analysis (Qiagen); Canonical Pathway Analysis, Diseases and Functions, and Upstream Analysis. .. All DNA microarray data (CEL files) were deposited in the National Center of Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo/, accession number GSE101131). ..

Article Title: DNA Methylation Represses IFN- -Induced and Signal Transducer and Activator of Transcription 1-Mediated IFN Regulatory Factor 8 Activation in Colon Carcinoma Cells
Article Snippet: .. Examination of DNA microarray data deposited in the National Center for Biotechnology Information Gene Expression Omnibus database revealed that IRF8 expression is detected in human breast, bone, soft tissue, cervix, colorectal, glial, kidney, lung, skin, ovarian, and prostate cancers. ..

Article Title: Transcriptomic responses of the liver and adipose tissues to altered carbohydrate-fat ratio in diet: an isoenergetic study in young rats
Article Snippet: .. All DNA microarray data (CEL files) presented in this publication have been deposited in the National Center of Biotechnology Information (NCBI) Gene Expression Omnibus ( http://www.ncbi.nlm.nih.gov/geo/ ) and are accessible through the accession number GSE79867. ..

Article Title: Expression profiling of the solute carrier gene family in chicken intestine from the late embryonic to early post-hatch stages.
Article Snippet: Intestinal development during late embryogenesis and early post-hatch has a long-term influence on digestive and absorptive capacity in chickens.. The objective of this research was to obtain a global view of intestinal solute carrier (SLC) gene family member expression from late embryogenesis until 2 weeks post-hatch with a focus on SLC genes involved in uptake of sugars and amino acids.. Small intestine samples from male chicks were collected on embryonic days 18 (E18) and 20 (E20), day of hatch and days 1, 3, 7 and 14 post-hatch.

Article Title: A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis.
Article Snippet: Objectives.. Four intrinsic molecular subsets (inflammatory, fibroproliferative, limited, normal-like) have previously been identified in SSc and are characterized by unique gene expression signatures and pathways.. The intrinsic subsets have been linked to improvement with specific therapies.

Gene Expression:

Article Title: Responses of muscle mass, strength and gene transcripts to long-term heat stress in healthy human subjects.
Article Snippet: The present study was performed to investigate the effects of long-term heat stress on mass, strength and gene expression profile of human skeletal muscles without exercise training.. Eight healthy men were subjected to 10-week application of heat stress, which was performed for the quadriceps muscles for 8 h/day and 4 days/week by using a heatand steam-generating sheet.. Maximum isometric force during knee extension of the heated leg significantly increased after heat stress (*5.8%, P \ 0.05).

Article Title: KLF5 protects the intestinal epithelium against Th17 immune response in a murine colitis model
Article Snippet: .. Meta-analysis of DNA microarray data from 2 independent National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) data sets showed significant decreases of KLF5 mRNA levels in inflamed (affected) regions of UC samples when compared with either unaffected regions or healthy individuals ( ) ( ). ..

Article Title: Seasoning ingredients in a medium-fat diet regulate lipid metabolism in peripheral tissues via the hypothalamic-pituitary axis in growing rats.
Article Snippet: For gene ontology analysis, DEGs were subjected to the software packages of Ingenuity Pathway Analysis (Qiagen); Canonical Pathway Analysis, Diseases and Functions, and Upstream Analysis. .. All DNA microarray data (CEL files) were deposited in the National Center of Biotechnology Information Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo/, accession number GSE101131). ..

Article Title: Short-term mastication after weaning upregulates GABAergic signalling and reduces dendritic spine in thalamus.
Article Snippet: .. Competing financial interests Mana Ogawa, Toshitada Nagai, Yoshikazu Saito, Hitonari Miyaguchi, Kei Kumakura, Keiko Abe, and Tomiko Asakura declare that they have no competing financial interests. ation after weaning upregulates GABAergic signalling and reduces unications (2018), https://doi.org/10.1016/j.bbrc.2018.03.032 Data availability All DNAmicroarray data (CEL files) presented in this publication have been deposited in the National Center of Biotechnology Information (NCBI) Gene Expression Omnibus (http://www.ncbi.nlm. nih.gov/geo/) and are accessible through the accession number GSE106766. ..

Article Title: DNA Methylation Represses IFN- -Induced and Signal Transducer and Activator of Transcription 1-Mediated IFN Regulatory Factor 8 Activation in Colon Carcinoma Cells
Article Snippet: .. Examination of DNA microarray data deposited in the National Center for Biotechnology Information Gene Expression Omnibus database revealed that IRF8 expression is detected in human breast, bone, soft tissue, cervix, colorectal, glial, kidney, lung, skin, ovarian, and prostate cancers. ..

Article Title: Transcriptomic responses of the liver and adipose tissues to altered carbohydrate-fat ratio in diet: an isoenergetic study in young rats
Article Snippet: .. All DNA microarray data (CEL files) presented in this publication have been deposited in the National Center of Biotechnology Information (NCBI) Gene Expression Omnibus ( http://www.ncbi.nlm.nih.gov/geo/ ) and are accessible through the accession number GSE79867. ..

Article Title: Expression profiling of the solute carrier gene family in chicken intestine from the late embryonic to early post-hatch stages.
Article Snippet: Intestinal development during late embryogenesis and early post-hatch has a long-term influence on digestive and absorptive capacity in chickens.. The objective of this research was to obtain a global view of intestinal solute carrier (SLC) gene family member expression from late embryogenesis until 2 weeks post-hatch with a focus on SLC genes involved in uptake of sugars and amino acids.. Small intestine samples from male chicks were collected on embryonic days 18 (E18) and 20 (E20), day of hatch and days 1, 3, 7 and 14 post-hatch.

Article Title: A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis.
Article Snippet: Objectives.. Four intrinsic molecular subsets (inflammatory, fibroproliferative, limited, normal-like) have previously been identified in SSc and are characterized by unique gene expression signatures and pathways.. The intrinsic subsets have been linked to improvement with specific therapies.

Expressing:

Article Title: DNA Methylation Represses IFN- -Induced and Signal Transducer and Activator of Transcription 1-Mediated IFN Regulatory Factor 8 Activation in Colon Carcinoma Cells
Article Snippet: .. Examination of DNA microarray data deposited in the National Center for Biotechnology Information Gene Expression Omnibus database revealed that IRF8 expression is detected in human breast, bone, soft tissue, cervix, colorectal, glial, kidney, lung, skin, ovarian, and prostate cancers. ..



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Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

Journal: BMC Genomics

Article Title: Genomic expression during human myelopoiesis

doi: 10.1186/1471-2164-8-264

Figure Lengend Snippet: Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

Article Snippet: In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation.

Techniques: Expressing, Microarray