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molecular evolutionary genetics analysis x (megax) software  (Biodesign International Inc)

 
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    Structured Review

    Biodesign International Inc molecular evolutionary genetics analysis x (megax) software
    Molecular Evolutionary Genetics Analysis X (Megax) Software, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/megax+software/molecular+evolutionary+genetics+analysis++mega++software/pmc08772547-78-13-29
    Average 90 stars, based on 1 article reviews
    molecular evolutionary genetics analysis x (megax) software - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Concerted and Independent Evolution of Control Regions 1 and 2 of Water Monitor Lizards ( Varanus salvator macromaculatus ) and Different Phylogenetic Informative Markers
    Article Snippet: Multiple sequence alignment was performed for 72 sequences in both CRs using the default parameters of Molecular Evolutionary Genetics Analysis X (MEGAX) software (Center for Evolutionary Functional Genomics, The Biodesign Institute, Tempe, PA, USA; [ ]).

    Article Title: Molecular evaluation of hepatitis B virus infection and predominant mutations of pre-core, basal core promoter and S regions in an Iranian population with type 2 diabetes mellitus: a case–control study
    Article Snippet: Then, the S and pre-C sequences isolated from the patients and the reference sequences were aligned by the ClustalW program in the Molecular Evolutionary Genetics Analysis (MEGA) software version 7.0 (Biodesign Institute, Tempe, AZ, USA) [ ].

    Article Title: The distribution of pigeon adenoviruses in Northern Chinese pigeon and turtledove flocks provides further evidence of viral crosstransmission.
    Article Snippet: Phylogeny reconstructions were visualized with Mega (Molecular Evolutionary Genetics Analysis, version 11; The Biodesign Institute) software using the neighbor-joining algorithm and the Jukes-Cantor distance model. Bootstrap support was assessed by 1,000 repetitive analyses.

    Article Title: Prevalence, genotype distribution and mutations of hepatitis B virus and the associated risk factors among pregnant women residing in the northern shores of Persian Gulf, Iran
    Article Snippet: The obtained sequences from the S, X, and pre-C regions of the HBV genome were aligned and compared with the reference sequences representing the standard HBV genotypes available at the nucleotide database of the NCBI by ClustalW program in the Molecular Evolutionary Genetics Analysis (MEGA) software version 7.0 (Biodesign Institute, Tempe, AZ, USA).

    Article Title: Isolation and Identification of a Rumen Lactobacillus Bacteria and Its Degradation Potential of Gossypol in Cottonseed Meal during Solid-State Fermentation
    Article Snippet: Phylogenetic and molecular evolutionary analysis were conducted at 1000 bootstrap value using Molecular Evolutionary Genetics Analysis (MEGA) version 5.0 software (Center of Evolutionary Functional Genomics, Biodesign Institute, Arizona State University, Tempe, AZ, USA) [ ].

    Article Title: Nanopore-Based Direct RNA-Sequencing Reveals a High-Resolution Transcriptional Landscape of Porcine Reproductive and Respiratory Syndrome Virus
    Article Snippet: To better understand the species distribution of the selected isolates, a phylogenetic tree was constructed based on the ClustalW method using the Molecular Evolutionary Genetics Analysis (Mega) version X program (The Biodesign Institute, Tempe, AZ, USA).

    Article Title: Allelic Variation in gtfB–gtfC Region of Natural Variant of Streptococcus mutans Without Biofilm Formation
    Article Snippet: Phylogenetic analyses of allele frequencies were performed using the unweighted pair group method with arithmetic mean (UPGMA) method in the Molecular Evolutionary Genetics Analysis (MEGA; www.megasoftware.net/, accessed on 11 September 2024, The Biodesign Institute, Tempe, AZ, USA)-11 software.

    Bacteria:

    Article Title: Efficient denitrification by a salt-tolerant aerobic compound bacteria agent AHM M3: optimizing composition and reduction conditions
    Article Snippet: Salt-tolerant aerobic denitrifiers can remove nitrate nitrogen (NO3-N) efficiently from polluted seawater under aerobic conditions.. Three salt-tolerant and aerobic denitrifiers, Zobellella sp. MAD-44, Halomonas alkaliphila HRL-9 and Vibrio spp.. AD2 were combined for preparing a compound agent named AHM M3.

    Construct:

    Article Title: Efficient denitrification by a salt-tolerant aerobic compound bacteria agent AHM M3: optimizing composition and reduction conditions
    Article Snippet: Salt-tolerant aerobic denitrifiers can remove nitrate nitrogen (NO3-N) efficiently from polluted seawater under aerobic conditions.. Three salt-tolerant and aerobic denitrifiers, Zobellella sp. MAD-44, Halomonas alkaliphila HRL-9 and Vibrio spp.. AD2 were combined for preparing a compound agent named AHM M3.

    Software:

    Article Title: Efficient denitrification by a salt-tolerant aerobic compound bacteria agent AHM M3: optimizing composition and reduction conditions
    Article Snippet: Salt-tolerant aerobic denitrifiers can remove nitrate nitrogen (NO3-N) efficiently from polluted seawater under aerobic conditions.. Three salt-tolerant and aerobic denitrifiers, Zobellella sp. MAD-44, Halomonas alkaliphila HRL-9 and Vibrio spp.. AD2 were combined for preparing a compound agent named AHM M3.



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    Image Search Results


    Phylogenetic tree based on the HA gene (The length of the gene fragment was 1683 bp, ATG nt~TAA nt). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. All of those isolates were presented in black circles, in which post-2013 isolates and pre-2013 isolates were highlighted in red and green, respectively. The scale bar represents the distance unit between sequence pairs.

    Journal: Transboundary and Emerging Diseases

    Article Title: Diversity of the H9N2 Avian Influenza Virus in Shandong Province, China

    doi: 10.1155/tbed/1432483

    Figure Lengend Snippet: Phylogenetic tree based on the HA gene (The length of the gene fragment was 1683 bp, ATG nt~TAA nt). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. All of those isolates were presented in black circles, in which post-2013 isolates and pre-2013 isolates were highlighted in red and green, respectively. The scale bar represents the distance unit between sequence pairs.

    Article Snippet: MEGAX software was employed to perform phylogenetic analysis for each gene segment together with the reference strain, and DNASTAR MegAlign software was used to analyze key amino acid sites.

    Techniques: Generated, Software, Comparison, Isolation, Sequencing

    Phylogenetic tree based on the NA gene (The length of the gene fragment was 1398 bp, ATG nt~ATA nt). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. All of those isolates were presented in black circles, in which post-2013 isolates and pre-2013 isolates were highlighted in red and green, respectively. The scale bar represents the distance unit between sequence pairs.

    Journal: Transboundary and Emerging Diseases

    Article Title: Diversity of the H9N2 Avian Influenza Virus in Shandong Province, China

    doi: 10.1155/tbed/1432483

    Figure Lengend Snippet: Phylogenetic tree based on the NA gene (The length of the gene fragment was 1398 bp, ATG nt~ATA nt). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. All of those isolates were presented in black circles, in which post-2013 isolates and pre-2013 isolates were highlighted in red and green, respectively. The scale bar represents the distance unit between sequence pairs.

    Article Snippet: MEGAX software was employed to perform phylogenetic analysis for each gene segment together with the reference strain, and DNASTAR MegAlign software was used to analyze key amino acid sites.

    Techniques: Generated, Software, Comparison, Isolation, Sequencing

    Phylogenetic trees based on the PB1, PB2, PA, NP, M, and NS genes (The complete ORF of each gene fragment was used for evolutionary analysis). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. Isolates are highlighted in black squares. The scale bar represents the distance unit between sequence pairs.

    Journal: Transboundary and Emerging Diseases

    Article Title: Diversity of the H9N2 Avian Influenza Virus in Shandong Province, China

    doi: 10.1155/tbed/1432483

    Figure Lengend Snippet: Phylogenetic trees based on the PB1, PB2, PA, NP, M, and NS genes (The complete ORF of each gene fragment was used for evolutionary analysis). The tree was generated by neighbor-joining method using MEGAX software. Phylogenetic trees were based on the comparison of nucleotide sequences of the H9N2 AIVs isolated in this study to the reference AIV sequences published in GenBank. Isolates are highlighted in black squares. The scale bar represents the distance unit between sequence pairs.

    Article Snippet: MEGAX software was employed to perform phylogenetic analysis for each gene segment together with the reference strain, and DNASTAR MegAlign software was used to analyze key amino acid sites.

    Techniques: Generated, Software, Comparison, Isolation, Sequencing